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pirl-unc / hitlist
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LAST BUILD BRANCH: fix/data-preflight-and-deprecation-884-893
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  • feat/severity-tiers-in-curation-plan
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  • feat/transcript-aware-mappings
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  • fix-306-coalesce-source-species
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  • fix-307-per-pmid-source-organism
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  • fix-weingarten-gabbay-2021-no-hbec
  • fix/230-phosphoantigen-restrictions
  • fix/255-download-timeout
  • fix/289-tool-neutral-dataset-errors
  • fix/291-datacache-data-dir
  • fix/306-canonical-source-organism
  • fix/357-depmap-expression-fetch
  • fix/358-hap1-depmap-reference
  • fix/359-sample-group
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  • fix/386-export-species-filters
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  • fix/425-gene-query-union
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  • fix/452-erap2-clone-arms
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31 Oct 2026 01:05PM UTC coverage: 84.44% (+0.09%) from 84.348%
41204020885

Pull #894

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Merge 3e8ef9f2c into 43e226621
Pull Request #894: Dataset preflight, exists/stale reporting, typed dataset errors, and a correct deprecation note (v2.1.10)

24600 of 29133 relevant lines covered (84.44%)

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41204020885 fix/data-preflight-and-deprecation-884-893 Merge 3e8ef9f2c into 43e226621 Pull #894 31 Oct 2026 01:26PM UTC web-flow github
84.44
41172131085 main Split cli.py into per-group modules (v2.1.9) (#892) * Add recursive CLI --help snapshot test (#887) Claude-Session: https://claude.ai/code/session_01JHJhwey3B7RxdNYuWenzXC * Extract data and build command groups into cli_data/cli_build (#887) ... push 31 Oct 2026 05:41AM UTC web-flow github
84.35
41170586134 refactor/cli-split-887 Merge 655d481df into d591e8922 Pull #892 31 Oct 2026 05:18AM UTC web-flow github
84.35
41169071720 main Verify size and sha256 of fetched datasets, reject empty downloads (v2.1.5) (#890) * Verify size and sha256 of fetched datasets, reject empty downloads (v2.1.5) Fixes #882. FETCHABLE_DATASETS entries carry min_size_bytes; fetch() rejects and rem... push 31 Oct 2026 04:51AM UTC web-flow github
84.29
41167518471 fix/download-integrity-882 Merge 7f8516e1c into 9cbc120aa Pull #890 31 Oct 2026 04:33AM UTC web-flow github
84.29
41167477281 main Add manifest_transaction() and atomic locked gene cache (v2.1.5) (#891) * Add manifest_transaction() and atomic locked gene cache (#883) Locked read-modify-write of manifest.json via filelock; load_manifest is the public read helper. Gene cache ... push 31 Oct 2026 04:27AM UTC web-flow github
84.25
41165102545 main Typed HitlistError hierarchy and single CLI error handler (v2.1.5) (#889) * Add HitlistError hierarchy, typed download errors, single CLI error handler (v2.1.5) Fixes #886 Claude-Session: https://claude.ai/code/session_01JHJhwey3B7RxdNYuWenzXC ... push 31 Oct 2026 04:01AM UTC web-flow github
84.25
41165166209 fix/manifest-transaction-883 Merge 47a7ef8e3 into 8b6f7ab7c Pull #891 31 Oct 2026 04:00AM UTC web-flow github
84.25
41163698222 main Do not cache HGNC lookup failures as empty results (v2.1.5) (#888) Transport failures and bad JSON now raise HGNCLookupError inside the lookup; resolve_hgnc_symbol warns and returns () for that call without writing to the disk or in-memory cache.... push 31 Oct 2026 03:39AM UTC web-flow github
84.22
41163810950 fix/download-integrity-882 Merge d1abca275 into 1fb85244b Pull #890 31 Oct 2026 03:36AM UTC web-flow github
84.26
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