• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

dnanexus-rnd / GLnexus
92%
master: 93%

Build:
Build:
LAST BUILD BRANCH: mlin/GxS
DEFAULT BRANCH: master
Repo Added 27 Jul 2015 05:17AM UTC
Files 32
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH performance_profiling
branch: performance_profiling
CHANGE BRANCH
x
Reset
  • performance_profiling
  • 1.1.12-1_add_max_allele_dv
  • HEAD
  • allow-N-ref
  • bcf_bucket_cache
  • bcf_bucket_cache_mt
  • better-BCF-range-checks
  • cli_command_iter_comp
  • compare-2-impl-sampleset-range
  • create_residuals_file
  • delineation-unification-placeholders-v2
  • enable_applet_residuals
  • genomic_range_buckets
  • gln-docker
  • import_gvcf_thread_safety
  • main
  • master
  • measure-loss
  • measure-loss-debug
  • measure_read_amp
  • medium-tests
  • mlin-AlleleDepthHelper-refactor
  • mlin-BCFBucketCache
  • mlin-BCFBucketCache-polishing
  • mlin-BCFData-optimize-discover-alleles
  • mlin-BCFKeyValueData-duplicate-danglers
  • mlin-KeyValue-Iterator
  • mlin-KeyValue-iterator-nocopy
  • mlin-RocksKeyValue-prefix
  • mlin-allele-info
  • mlin-allele-target-range
  • mlin-allele-unifier-v1
  • mlin-backout-cache
  • mlin-bcfreader-refactor
  • mlin-bulk-insert-buffer
  • mlin-call-two-overlapping-variants
  • mlin-capnp-sites
  • mlin-capnproto-0.7.0
  • mlin-censor-nocall-format-fields
  • mlin-config-yml
  • mlin-deepvariant
  • mlin-deepvariant-20181109
  • mlin-depr-capnp
  • mlin-detect-misaligned-indels
  • mlin-disable-PL-validation
  • mlin-discover-soft-copy-number
  • mlin-discovered-alleles-yaml
  • mlin-discovery-bias00
  • mlin-discovery-unification-quality
  • mlin-docker-pr-build
  • mlin-dv-noncalled
  • mlin-dv-partial-data
  • mlin-dv-pl
  • mlin-etl-folders
  • mlin-fine-grain-RNC
  • mlin-fix-unification-model
  • mlin-format-fields
  • mlin-format-from-info
  • mlin-genotype-revision
  • mlin-genotype-revision-ARCHIVED
  • mlin-genotype-revision-simplified
  • mlin-genotyper-beta2
  • mlin-genotyper-log-stalls
  • mlin-genotyper-rnc
  • mlin-gvcf-manifest
  • mlin-gvcf-symbolic-assumption
  • mlin-inconsistent-trim
  • mlin-issue168
  • mlin-jemalloc-tuning
  • mlin-measure-loss
  • mlin-mem-thread-budgets
  • mlin-memoize-all-samples-sampleset
  • mlin-metadata-cache
  • mlin-milestone1-cli
  • mlin-min-dp
  • mlin-minAQ2
  • mlin-multistage-dockerfile
  • mlin-multithread-query-test
  • mlin-multithread-scalability
  • mlin-multithread-scalability2
  • mlin-overlap-compactions-discovery
  • mlin-placeholder-gvcf-genotyper
  • mlin-pseudo-ref-records
  • mlin-range-bcf-end
  • mlin-readme
  • mlin-reduce-residuals
  • mlin-ref-PL
  • mlin-refactor-datacache-again
  • mlin-refactor-ingestion-exceptions
  • mlin-relax-unifier
  • mlin-remove-loss-tracking
  • mlin-reorder-format
  • mlin-residual-containing-range
  • mlin-revise-allele-pruning
  • mlin-revise-homalt
  • mlin-revise11
  • mlin-rocksdb-upgrade
  • mlin-rockskeyvalue
  • mlin-rockskeyvalue-config
  • mlin-sample-count
  • mlin-sampleset-consistency
  • mlin-sampleset-range
  • mlin-service-abort-operations
  • mlin-shorten-keys
  • mlin-simplify-range_of_bcf
  • mlin-skip-index
  • mlin-spdlog
  • mlin-squeeze
  • mlin-star-allele
  • mlin-strelka2
  • mlin-travis-docker
  • mlin-travis-modernization
  • mlin-travis-release
  • mlin-travis-valgrind
  • mlin-trim-uncalled-alleles
  • mlin-tweak-build
  • mlin-unification-alt-dna
  • mlin-unification-tests-1109
  • mlin-unified-site-yaml-parser
  • mlin-unifier-allele-frequencies
  • mlin-unifier-max-alleles
  • mlin-unifier-memory-usage
  • mlin-unifier-prefer-small-alleles
  • mlin-universal-compaction
  • mlin-unrepresentable-symbolic-allele
  • mlin-update-getting-started
  • mlin-update-spdlog
  • mlin-upgrade-capnp
  • mlin-variant-qual
  • mlin-weCall-calibration
  • mlin-wecall
  • mlin-wip
  • mlin-workaround-neg-PL
  • mlin-xAtlas-calibration
  • mlin-xAtlas-wip
  • mlin-xatlas
  • mlin-zstd
  • mlin/GxS
  • mlin/dv-prior-calibration
  • mlin/ghci
  • mlin/test-gvcf-norm
  • mlin/top2-half-calls
  • mlin20160319
  • mlin_minGQ
  • one_pass
  • orodeh-long-confidence-intervals
  • orodeh-profiling
  • orodeh-vcf-shard-merge
  • orodeh-vcf-shard-merge-bgzip
  • orodeh-vcf-shard-merge-mt-bgzip
  • orodeh_allele_discovery_in_first_phase
  • orodeh_capnp
  • orodeh_capnp_debug
  • orodeh_capnp_debug_II
  • orodeh_capnp_debug_III
  • orodeh_cleanup_unify_and_discover
  • orodeh_config_param_for_new_subcommands
  • orodeh_config_yaml_serialization
  • orodeh_discovered_alleles_parallel_load
  • orodeh_dynamic_jemalloc
  • orodeh_ensure_jemelloc
  • orodeh_experiments
  • orodeh_expose_bucket_size_arg
  • orodeh_gvcf_ingest_validation
  • orodeh_lambda_predicate_for_queries
  • orodeh_malloc_perf
  • orodeh_malloc_static
  • orodeh_mt_bgzip
  • orodeh_one_db_pass_genotyper
  • orodeh_perf_lxc
  • orodeh_profiling
  • orodeh_report_bad_yaml_file
  • orodeh_separate_discover_phase
  • orodeh_simple_public_cli
  • orodeh_stream_yaml
  • orodeh_unify_sites_as_stage
  • orodeh_vcf_compare
  • orodeh_yaml_stream_unify_sites
  • perf_32_cpu
  • perf_prof_with_bcf_cache
  • profiling_WIP
  • revert-111-orodeh_capnp_debug_III
  • revert-122-mlin-skip-index
  • split_ch2
  • split_chrom
  • split_gvcf_into_chromosomes
  • tedyun-fixaq2zero
  • test_travis_release
  • translate-genotype-REF-check
  • travis-master-pr-builds
  • ubcf
  • ubcf_cleanup
  • unify_alleles_on_vector_inputs
  • update_bgzip
  • v0.1.0
  • v0.2.0
  • v0.3.0
  • v0.3.1
  • v0.3.2
  • v0.3.3
  • v0.5.0
  • v0.5.x
  • v0.6.1
  • v1.0.0
  • v1.0.1
  • v1.0.2
  • v1.1.0
  • v1.1.1
  • v1.1.10
  • v1.1.11
  • v1.1.12
  • v1.1.12-1
  • v1.1.2
  • v1.1.3
  • v1.1.4
  • v1.1.5
  • v1.1.6
  • v1.1.7
  • v1.1.8
  • v1.1.9
  • v1.1.x
  • v1.2.0
  • v1.2.0-pre.0
  • v1.2.1
  • v1.2.2
  • v1.2.3
  • v1.2.4
  • v1.2.5
  • v1.2.6
  • v1.2.7
  • vectorize_applet
  • ymen-format-field-defaults
  • ymen-format-field-ignore-ref
  • ymen-format-fields
  • ymen-format-fields-clear-on-rnc
  • ymen-genotyper-v0.1
  • ymen-genotyper-v1
  • ymen-prep-for-genotype-v1
  • ymen-trim-alts
  • ymen-yaml-test-case
  • ymen_genotyper_add_yml_tests
  • zero_copy_bucket_scan

pending completion
441

push

travis-ci

orodeh
Adding the option to do performance profiling with flame graphs.

The makefile now supports compilation with the PROFILE option. These
are compilation flags that leave enough information in the object code
to allow figuring out stack traces. The applet has a new flag
"enable_perf" that installs profiling tools, and returns profiling
data in its output.

1384 of 1498 relevant lines covered (92.39%)

2833.63 hits per line

Relevant lines Covered
Build:
Build:
1498 RELEVANT LINES 1384 COVERED LINES
2833.63 HITS PER LINE
Source Files on performance_profiling
  • List 0
  • Changed 14
  • Source Changed 4
  • Coverage Changed 14
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
441 performance_profiling Adding the option to do performance profiling with flame graphs. The makefile now supports compilation with the PROFILE option. These are compilation flags that leave enough information in the object code to allow figuring out stack traces. The a... push 19 Oct 2015 03:52PM UTC orodeh travis-ci pending completion  
439 performance_profiling Fixing code review push 19 Oct 2015 03:44PM UTC orodeh travis-ci pending completion  
418 performance_profiling Adding usage instructions and moving the compilation flags under a separate flag push 16 Oct 2015 12:37AM UTC orodeh travis-ci pending completion  
417 performance_profiling Adding usage instructions and moving the compilation flags under a separate flag push 16 Oct 2015 12:26AM UTC orodeh travis-ci pending completion  
371 performance_profiling These flags need to be uncommented in order to get good profiling data push 06 Oct 2015 12:41AM UTC orodeh travis-ci pending completion  
352 performance_profiling Generated data is large, reducing it on the worker machine push 02 Oct 2015 09:24PM UTC orodeh travis-ci pending completion  
341 performance_profiling Initial version of performance profiling with flame graphs push 01 Oct 2015 11:28PM UTC orodeh travis-ci pending completion  
See All Builds (1754)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc