• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

dnanexus-rnd / GLnexus
93%
master: 93%

Build:
Build:
LAST BUILD BRANCH: mlin/GxS
DEFAULT BRANCH: master
Repo Added 27 Jul 2015 05:17AM UTC
Files 32
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH mlin-relax-unifier
branch: mlin-relax-unifier
CHANGE BRANCH
x
Reset
  • mlin-relax-unifier
  • 1.1.12-1_add_max_allele_dv
  • HEAD
  • allow-N-ref
  • bcf_bucket_cache
  • bcf_bucket_cache_mt
  • better-BCF-range-checks
  • cli_command_iter_comp
  • compare-2-impl-sampleset-range
  • create_residuals_file
  • delineation-unification-placeholders-v2
  • enable_applet_residuals
  • genomic_range_buckets
  • gln-docker
  • import_gvcf_thread_safety
  • main
  • master
  • measure-loss
  • measure-loss-debug
  • measure_read_amp
  • medium-tests
  • mlin-AlleleDepthHelper-refactor
  • mlin-BCFBucketCache
  • mlin-BCFBucketCache-polishing
  • mlin-BCFData-optimize-discover-alleles
  • mlin-BCFKeyValueData-duplicate-danglers
  • mlin-KeyValue-Iterator
  • mlin-KeyValue-iterator-nocopy
  • mlin-RocksKeyValue-prefix
  • mlin-allele-info
  • mlin-allele-target-range
  • mlin-allele-unifier-v1
  • mlin-backout-cache
  • mlin-bcfreader-refactor
  • mlin-bulk-insert-buffer
  • mlin-call-two-overlapping-variants
  • mlin-capnp-sites
  • mlin-capnproto-0.7.0
  • mlin-censor-nocall-format-fields
  • mlin-config-yml
  • mlin-deepvariant
  • mlin-deepvariant-20181109
  • mlin-depr-capnp
  • mlin-detect-misaligned-indels
  • mlin-disable-PL-validation
  • mlin-discover-soft-copy-number
  • mlin-discovered-alleles-yaml
  • mlin-discovery-bias00
  • mlin-discovery-unification-quality
  • mlin-docker-pr-build
  • mlin-dv-noncalled
  • mlin-dv-partial-data
  • mlin-dv-pl
  • mlin-etl-folders
  • mlin-fine-grain-RNC
  • mlin-fix-unification-model
  • mlin-format-fields
  • mlin-format-from-info
  • mlin-genotype-revision
  • mlin-genotype-revision-ARCHIVED
  • mlin-genotype-revision-simplified
  • mlin-genotyper-beta2
  • mlin-genotyper-log-stalls
  • mlin-genotyper-rnc
  • mlin-gvcf-manifest
  • mlin-gvcf-symbolic-assumption
  • mlin-inconsistent-trim
  • mlin-issue168
  • mlin-jemalloc-tuning
  • mlin-measure-loss
  • mlin-mem-thread-budgets
  • mlin-memoize-all-samples-sampleset
  • mlin-metadata-cache
  • mlin-milestone1-cli
  • mlin-min-dp
  • mlin-minAQ2
  • mlin-multistage-dockerfile
  • mlin-multithread-query-test
  • mlin-multithread-scalability
  • mlin-multithread-scalability2
  • mlin-overlap-compactions-discovery
  • mlin-placeholder-gvcf-genotyper
  • mlin-pseudo-ref-records
  • mlin-range-bcf-end
  • mlin-readme
  • mlin-reduce-residuals
  • mlin-ref-PL
  • mlin-refactor-datacache-again
  • mlin-refactor-ingestion-exceptions
  • mlin-remove-loss-tracking
  • mlin-reorder-format
  • mlin-residual-containing-range
  • mlin-revise-allele-pruning
  • mlin-revise-homalt
  • mlin-revise11
  • mlin-rocksdb-upgrade
  • mlin-rockskeyvalue
  • mlin-rockskeyvalue-config
  • mlin-sample-count
  • mlin-sampleset-consistency
  • mlin-sampleset-range
  • mlin-service-abort-operations
  • mlin-shorten-keys
  • mlin-simplify-range_of_bcf
  • mlin-skip-index
  • mlin-spdlog
  • mlin-squeeze
  • mlin-star-allele
  • mlin-strelka2
  • mlin-travis-docker
  • mlin-travis-modernization
  • mlin-travis-release
  • mlin-travis-valgrind
  • mlin-trim-uncalled-alleles
  • mlin-tweak-build
  • mlin-unification-alt-dna
  • mlin-unification-tests-1109
  • mlin-unified-site-yaml-parser
  • mlin-unifier-allele-frequencies
  • mlin-unifier-max-alleles
  • mlin-unifier-memory-usage
  • mlin-unifier-prefer-small-alleles
  • mlin-universal-compaction
  • mlin-unrepresentable-symbolic-allele
  • mlin-update-getting-started
  • mlin-update-spdlog
  • mlin-upgrade-capnp
  • mlin-variant-qual
  • mlin-weCall-calibration
  • mlin-wecall
  • mlin-wip
  • mlin-workaround-neg-PL
  • mlin-xAtlas-calibration
  • mlin-xAtlas-wip
  • mlin-xatlas
  • mlin-zstd
  • mlin/GxS
  • mlin/dv-prior-calibration
  • mlin/ghci
  • mlin/test-gvcf-norm
  • mlin/top2-half-calls
  • mlin20160319
  • mlin_minGQ
  • one_pass
  • orodeh-long-confidence-intervals
  • orodeh-profiling
  • orodeh-vcf-shard-merge
  • orodeh-vcf-shard-merge-bgzip
  • orodeh-vcf-shard-merge-mt-bgzip
  • orodeh_allele_discovery_in_first_phase
  • orodeh_capnp
  • orodeh_capnp_debug
  • orodeh_capnp_debug_II
  • orodeh_capnp_debug_III
  • orodeh_cleanup_unify_and_discover
  • orodeh_config_param_for_new_subcommands
  • orodeh_config_yaml_serialization
  • orodeh_discovered_alleles_parallel_load
  • orodeh_dynamic_jemalloc
  • orodeh_ensure_jemelloc
  • orodeh_experiments
  • orodeh_expose_bucket_size_arg
  • orodeh_gvcf_ingest_validation
  • orodeh_lambda_predicate_for_queries
  • orodeh_malloc_perf
  • orodeh_malloc_static
  • orodeh_mt_bgzip
  • orodeh_one_db_pass_genotyper
  • orodeh_perf_lxc
  • orodeh_profiling
  • orodeh_report_bad_yaml_file
  • orodeh_separate_discover_phase
  • orodeh_simple_public_cli
  • orodeh_stream_yaml
  • orodeh_unify_sites_as_stage
  • orodeh_vcf_compare
  • orodeh_yaml_stream_unify_sites
  • perf_32_cpu
  • perf_prof_with_bcf_cache
  • performance_profiling
  • profiling_WIP
  • revert-111-orodeh_capnp_debug_III
  • revert-122-mlin-skip-index
  • split_ch2
  • split_chrom
  • split_gvcf_into_chromosomes
  • tedyun-fixaq2zero
  • test_travis_release
  • translate-genotype-REF-check
  • travis-master-pr-builds
  • ubcf
  • ubcf_cleanup
  • unify_alleles_on_vector_inputs
  • update_bgzip
  • v0.1.0
  • v0.2.0
  • v0.3.0
  • v0.3.1
  • v0.3.2
  • v0.3.3
  • v0.5.0
  • v0.5.x
  • v0.6.1
  • v1.0.0
  • v1.0.1
  • v1.0.2
  • v1.1.0
  • v1.1.1
  • v1.1.10
  • v1.1.11
  • v1.1.12
  • v1.1.12-1
  • v1.1.2
  • v1.1.3
  • v1.1.4
  • v1.1.5
  • v1.1.6
  • v1.1.7
  • v1.1.8
  • v1.1.9
  • v1.1.x
  • v1.2.0
  • v1.2.0-pre.0
  • v1.2.1
  • v1.2.2
  • v1.2.3
  • v1.2.4
  • v1.2.5
  • v1.2.6
  • v1.2.7
  • vectorize_applet
  • ymen-format-field-defaults
  • ymen-format-field-ignore-ref
  • ymen-format-fields
  • ymen-format-fields-clear-on-rnc
  • ymen-genotyper-v0.1
  • ymen-genotyper-v1
  • ymen-prep-for-genotype-v1
  • ymen-trim-alts
  • ymen-yaml-test-case
  • ymen_genotyper_add_yml_tests
  • zero_copy_bucket_scan

pending completion
1038

push

travis-ci

mlin
relax unifier so that alleles at a site needn't all overlap all others

this should be safe as long as the genotyper will not create phase assertions spanning multiple variant records in one sample

2572 of 2752 relevant lines covered (93.46%)

38859.69 hits per line

Relevant lines Covered
Build:
Build:
2752 RELEVANT LINES 2572 COVERED LINES
38859.69 HITS PER LINE
Source Files on mlin-relax-unifier
  • List 0
  • Changed 17
  • Source Changed 3
  • Coverage Changed 16
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1038 mlin-relax-unifier relax unifier so that alleles at a site needn't all overlap all others this should be safe as long as the genotyper will not create phase assertions spanning multiple variant records in one sample push 20 May 2016 03:28AM UTC mlin travis-ci pending completion  
1006 mlin-relax-unifier relax unifier so that alleles at a site needn't all overlap all others this should be safe as long as the genotyper will not create phase assertions spanning multiple variant records in one sample push 11 May 2016 04:43AM UTC mlin travis-ci pending completion  
889 mlin-relax-unifier relax unifier so that alleles at a site needn't all overlap all others this should be safe as long as the genotyper will not create phase assertions spanning multiple variant records in one sample push 25 Feb 2016 07:17AM UTC mlin travis-ci pending completion  
See All Builds (1754)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc