dnanexus-rnd / GLnexus

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• main
• 1.1.12-1_add_max_allele_dv
• HEAD
• allow-N-ref
• bcf_bucket_cache
• bcf_bucket_cache_mt
• better-BCF-range-checks
• cli_command_iter_comp
• compare-2-impl-sampleset-range
• create_residuals_file
• delineation-unification-placeholders-v2
• enable_applet_residuals
• genomic_range_buckets
• gln-docker
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• master
• measure-loss
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• medium-tests
• mlin-AlleleDepthHelper-refactor
• mlin-BCFBucketCache
• mlin-BCFBucketCache-polishing
• mlin-BCFData-optimize-discover-alleles
• mlin-BCFKeyValueData-duplicate-danglers
• mlin-KeyValue-Iterator
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• mlin-RocksKeyValue-prefix
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• mlin-call-two-overlapping-variants
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• mlin-capnproto-0.7.0
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• mlin-config-yml
• mlin-deepvariant
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• mlin-depr-capnp
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• mlin-disable-PL-validation
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• mlin-discovered-alleles-yaml
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• mlin-discovery-unification-quality
• mlin-docker-pr-build
• mlin-dv-noncalled
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• mlin-dv-pl
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• mlin-genotype-revision-ARCHIVED
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• mlin-sample-count
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• mlin-sampleset-range
• mlin-service-abort-operations
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• mlin-simplify-range_of_bcf
• mlin-skip-index
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• mlin-travis-docker
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• mlin-travis-release
• mlin-travis-valgrind
• mlin-trim-uncalled-alleles
• mlin-tweak-build
• mlin-unification-alt-dna
• mlin-unification-tests-1109
• mlin-unified-site-yaml-parser
• mlin-unifier-allele-frequencies
• mlin-unifier-max-alleles
• mlin-unifier-memory-usage
• mlin-unifier-prefer-small-alleles
• mlin-universal-compaction
• mlin-unrepresentable-symbolic-allele
• mlin-update-getting-started
• mlin-update-spdlog
• mlin-upgrade-capnp
• mlin-variant-qual
• mlin-weCall-calibration
• mlin-wecall
• mlin-wip
• mlin-workaround-neg-PL
• mlin-xAtlas-calibration
• mlin-xAtlas-wip
• mlin-xatlas
• mlin-zstd
• mlin/GxS
• mlin/dv-prior-calibration
• mlin/ghci
• mlin/test-gvcf-norm
• mlin/top2-half-calls
• mlin20160319
• mlin_minGQ
• one_pass
• orodeh-long-confidence-intervals
• orodeh-profiling
• orodeh-vcf-shard-merge
• orodeh-vcf-shard-merge-bgzip
• orodeh-vcf-shard-merge-mt-bgzip
• orodeh_allele_discovery_in_first_phase
• orodeh_capnp
• orodeh_capnp_debug
• orodeh_capnp_debug_II
• orodeh_capnp_debug_III
• orodeh_cleanup_unify_and_discover
• orodeh_config_param_for_new_subcommands
• orodeh_config_yaml_serialization
• orodeh_discovered_alleles_parallel_load
• orodeh_dynamic_jemalloc
• orodeh_ensure_jemelloc
• orodeh_experiments
• orodeh_expose_bucket_size_arg
• orodeh_gvcf_ingest_validation
• orodeh_lambda_predicate_for_queries
• orodeh_malloc_perf
• orodeh_malloc_static
• orodeh_mt_bgzip
• orodeh_one_db_pass_genotyper
• orodeh_perf_lxc
• orodeh_profiling
• orodeh_report_bad_yaml_file
• orodeh_separate_discover_phase
• orodeh_simple_public_cli
• orodeh_stream_yaml
• orodeh_unify_sites_as_stage
• orodeh_vcf_compare
• orodeh_yaml_stream_unify_sites
• perf_32_cpu
• perf_prof_with_bcf_cache
• performance_profiling
• profiling_WIP
• revert-111-orodeh_capnp_debug_III
• revert-122-mlin-skip-index
• split_ch2
• split_chrom
• split_gvcf_into_chromosomes
• tedyun-fixaq2zero
• test_travis_release
• translate-genotype-REF-check
• travis-master-pr-builds
• ubcf
• ubcf_cleanup
• unify_alleles_on_vector_inputs
• update_bgzip
• v0.1.0
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• v1.2.6
• v1.2.7
• vectorize_applet
• ymen-format-field-defaults
• ymen-format-field-ignore-ref
• ymen-format-fields
• ymen-format-fields-clear-on-rnc
• ymen-genotyper-v0.1
• ymen-genotyper-v1
• ymen-prep-for-genotype-v1
• ymen-trim-alts
• ymen-yaml-test-case
• ymen_genotyper_add_yml_tests
• zero_copy_bucket_scan

migrate CI to GitHub (#262)