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dnanexus-rnd / GLnexus
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DEFAULT BRANCH: master
Repo Added 27 Jul 2015 05:17AM UTC
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LAST BUILD ON BRANCH master
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  • master
  • 1.1.12-1_add_max_allele_dv
  • HEAD
  • allow-N-ref
  • bcf_bucket_cache
  • bcf_bucket_cache_mt
  • better-BCF-range-checks
  • cli_command_iter_comp
  • compare-2-impl-sampleset-range
  • create_residuals_file
  • delineation-unification-placeholders-v2
  • enable_applet_residuals
  • genomic_range_buckets
  • gln-docker
  • import_gvcf_thread_safety
  • main
  • measure-loss
  • measure-loss-debug
  • measure_read_amp
  • medium-tests
  • mlin-AlleleDepthHelper-refactor
  • mlin-BCFBucketCache
  • mlin-BCFBucketCache-polishing
  • mlin-BCFData-optimize-discover-alleles
  • mlin-BCFKeyValueData-duplicate-danglers
  • mlin-KeyValue-Iterator
  • mlin-KeyValue-iterator-nocopy
  • mlin-RocksKeyValue-prefix
  • mlin-allele-info
  • mlin-allele-target-range
  • mlin-allele-unifier-v1
  • mlin-backout-cache
  • mlin-bcfreader-refactor
  • mlin-bulk-insert-buffer
  • mlin-call-two-overlapping-variants
  • mlin-capnp-sites
  • mlin-capnproto-0.7.0
  • mlin-censor-nocall-format-fields
  • mlin-config-yml
  • mlin-deepvariant
  • mlin-deepvariant-20181109
  • mlin-depr-capnp
  • mlin-detect-misaligned-indels
  • mlin-disable-PL-validation
  • mlin-discover-soft-copy-number
  • mlin-discovered-alleles-yaml
  • mlin-discovery-bias00
  • mlin-discovery-unification-quality
  • mlin-docker-pr-build
  • mlin-dv-noncalled
  • mlin-dv-partial-data
  • mlin-dv-pl
  • mlin-etl-folders
  • mlin-fine-grain-RNC
  • mlin-fix-unification-model
  • mlin-format-fields
  • mlin-format-from-info
  • mlin-genotype-revision
  • mlin-genotype-revision-ARCHIVED
  • mlin-genotype-revision-simplified
  • mlin-genotyper-beta2
  • mlin-genotyper-log-stalls
  • mlin-genotyper-rnc
  • mlin-gvcf-manifest
  • mlin-gvcf-symbolic-assumption
  • mlin-inconsistent-trim
  • mlin-issue168
  • mlin-jemalloc-tuning
  • mlin-measure-loss
  • mlin-mem-thread-budgets
  • mlin-memoize-all-samples-sampleset
  • mlin-metadata-cache
  • mlin-milestone1-cli
  • mlin-min-dp
  • mlin-minAQ2
  • mlin-multistage-dockerfile
  • mlin-multithread-query-test
  • mlin-multithread-scalability
  • mlin-multithread-scalability2
  • mlin-overlap-compactions-discovery
  • mlin-placeholder-gvcf-genotyper
  • mlin-pseudo-ref-records
  • mlin-range-bcf-end
  • mlin-readme
  • mlin-reduce-residuals
  • mlin-ref-PL
  • mlin-refactor-datacache-again
  • mlin-refactor-ingestion-exceptions
  • mlin-relax-unifier
  • mlin-remove-loss-tracking
  • mlin-reorder-format
  • mlin-residual-containing-range
  • mlin-revise-allele-pruning
  • mlin-revise-homalt
  • mlin-revise11
  • mlin-rocksdb-upgrade
  • mlin-rockskeyvalue
  • mlin-rockskeyvalue-config
  • mlin-sample-count
  • mlin-sampleset-consistency
  • mlin-sampleset-range
  • mlin-service-abort-operations
  • mlin-shorten-keys
  • mlin-simplify-range_of_bcf
  • mlin-skip-index
  • mlin-spdlog
  • mlin-squeeze
  • mlin-star-allele
  • mlin-strelka2
  • mlin-travis-docker
  • mlin-travis-modernization
  • mlin-travis-release
  • mlin-travis-valgrind
  • mlin-trim-uncalled-alleles
  • mlin-tweak-build
  • mlin-unification-alt-dna
  • mlin-unification-tests-1109
  • mlin-unified-site-yaml-parser
  • mlin-unifier-allele-frequencies
  • mlin-unifier-max-alleles
  • mlin-unifier-memory-usage
  • mlin-unifier-prefer-small-alleles
  • mlin-universal-compaction
  • mlin-unrepresentable-symbolic-allele
  • mlin-update-getting-started
  • mlin-update-spdlog
  • mlin-upgrade-capnp
  • mlin-variant-qual
  • mlin-weCall-calibration
  • mlin-wecall
  • mlin-wip
  • mlin-workaround-neg-PL
  • mlin-xAtlas-calibration
  • mlin-xAtlas-wip
  • mlin-xatlas
  • mlin-zstd
  • mlin/GxS
  • mlin/dv-prior-calibration
  • mlin/ghci
  • mlin/test-gvcf-norm
  • mlin/top2-half-calls
  • mlin20160319
  • mlin_minGQ
  • one_pass
  • orodeh-long-confidence-intervals
  • orodeh-profiling
  • orodeh-vcf-shard-merge
  • orodeh-vcf-shard-merge-bgzip
  • orodeh-vcf-shard-merge-mt-bgzip
  • orodeh_allele_discovery_in_first_phase
  • orodeh_capnp
  • orodeh_capnp_debug
  • orodeh_capnp_debug_II
  • orodeh_capnp_debug_III
  • orodeh_cleanup_unify_and_discover
  • orodeh_config_param_for_new_subcommands
  • orodeh_config_yaml_serialization
  • orodeh_discovered_alleles_parallel_load
  • orodeh_dynamic_jemalloc
  • orodeh_ensure_jemelloc
  • orodeh_experiments
  • orodeh_expose_bucket_size_arg
  • orodeh_gvcf_ingest_validation
  • orodeh_lambda_predicate_for_queries
  • orodeh_malloc_perf
  • orodeh_malloc_static
  • orodeh_mt_bgzip
  • orodeh_one_db_pass_genotyper
  • orodeh_perf_lxc
  • orodeh_profiling
  • orodeh_report_bad_yaml_file
  • orodeh_separate_discover_phase
  • orodeh_simple_public_cli
  • orodeh_stream_yaml
  • orodeh_unify_sites_as_stage
  • orodeh_vcf_compare
  • orodeh_yaml_stream_unify_sites
  • perf_32_cpu
  • perf_prof_with_bcf_cache
  • performance_profiling
  • profiling_WIP
  • revert-111-orodeh_capnp_debug_III
  • revert-122-mlin-skip-index
  • split_ch2
  • split_chrom
  • split_gvcf_into_chromosomes
  • tedyun-fixaq2zero
  • test_travis_release
  • translate-genotype-REF-check
  • travis-master-pr-builds
  • ubcf
  • ubcf_cleanup
  • unify_alleles_on_vector_inputs
  • update_bgzip
  • v0.1.0
  • v0.2.0
  • v0.3.0
  • v0.3.1
  • v0.3.2
  • v0.3.3
  • v0.5.0
  • v0.5.x
  • v0.6.1
  • v1.0.0
  • v1.0.1
  • v1.0.2
  • v1.1.0
  • v1.1.1
  • v1.1.10
  • v1.1.11
  • v1.1.12
  • v1.1.12-1
  • v1.1.2
  • v1.1.3
  • v1.1.4
  • v1.1.5
  • v1.1.6
  • v1.1.7
  • v1.1.8
  • v1.1.9
  • v1.1.x
  • v1.2.0
  • v1.2.0-pre.0
  • v1.2.1
  • v1.2.2
  • v1.2.3
  • v1.2.4
  • v1.2.5
  • v1.2.6
  • v1.2.7
  • vectorize_applet
  • ymen-format-field-defaults
  • ymen-format-field-ignore-ref
  • ymen-format-fields
  • ymen-format-fields-clear-on-rnc
  • ymen-genotyper-v0.1
  • ymen-genotyper-v1
  • ymen-prep-for-genotype-v1
  • ymen-trim-alts
  • ymen-yaml-test-case
  • ymen_genotyper_add_yml_tests
  • zero_copy_bucket_scan

pending completion
2174

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mlin
bump dependencies

4333 of 4639 relevant lines covered (93.4%)

1919441.09 hits per line

Relevant lines Covered
Build:
Build:
4639 RELEVANT LINES 4333 COVERED LINES
1919441.09 HITS PER LINE
Source Files on master
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2174 master bump dependencies push 13 Aug 2020 11:08AM UTC mlin travis-ci pending completion  
2173 master Add preset 'DeepVariant_unfiltered', analogous to 'gatk_unfiltered', etc. push 13 Aug 2020 09:04AM UTC mlin travis-ci pending completion  
2169 master Fix typo AQ-->AF in error message It should be possible to distinguish update failure for AF/AQ now. push 30 May 2020 10:59AM UTC mlin travis-ci pending completion  
2167 master maintenance: deps, python3, error messages push 27 May 2020 07:30AM UTC mlin travis-ci pending completion  
2163 master prevent CI timeout push 22 Feb 2020 07:31PM UTC mlin travis-ci pending completion  
2161 master prevent CI timeout push 22 Feb 2020 09:52AM UTC mlin travis-ci pending completion  
2147 master RocksDB v6.6.4 push 17 Feb 2020 09:36PM UTC mlin travis-ci pending completion  
2145 master add weCall_unfiltered configuration preset push 17 Feb 2020 02:44AM UTC mlin travis-ci pending completion  
2144 master Update README.md push 12 Feb 2020 03:18AM UTC web-flow travis-ci pending completion  
2143 master bump dependency revisions push 24 Jan 2020 07:57AM UTC mlin travis-ci pending completion  
See All Builds (1754)
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