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dnanexus-rnd / GLnexus
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DEFAULT BRANCH: master
Repo Added 27 Jul 2015 05:17AM UTC
Files 32
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LAST BUILD ON BRANCH master
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  • master
  • 1.1.12-1_add_max_allele_dv
  • HEAD
  • allow-N-ref
  • bcf_bucket_cache
  • bcf_bucket_cache_mt
  • better-BCF-range-checks
  • cli_command_iter_comp
  • compare-2-impl-sampleset-range
  • create_residuals_file
  • delineation-unification-placeholders-v2
  • enable_applet_residuals
  • genomic_range_buckets
  • gln-docker
  • import_gvcf_thread_safety
  • main
  • measure-loss
  • measure-loss-debug
  • measure_read_amp
  • medium-tests
  • mlin-AlleleDepthHelper-refactor
  • mlin-BCFBucketCache
  • mlin-BCFBucketCache-polishing
  • mlin-BCFData-optimize-discover-alleles
  • mlin-BCFKeyValueData-duplicate-danglers
  • mlin-KeyValue-Iterator
  • mlin-KeyValue-iterator-nocopy
  • mlin-RocksKeyValue-prefix
  • mlin-allele-info
  • mlin-allele-target-range
  • mlin-allele-unifier-v1
  • mlin-backout-cache
  • mlin-bcfreader-refactor
  • mlin-bulk-insert-buffer
  • mlin-call-two-overlapping-variants
  • mlin-capnp-sites
  • mlin-capnproto-0.7.0
  • mlin-censor-nocall-format-fields
  • mlin-config-yml
  • mlin-deepvariant
  • mlin-deepvariant-20181109
  • mlin-depr-capnp
  • mlin-detect-misaligned-indels
  • mlin-disable-PL-validation
  • mlin-discover-soft-copy-number
  • mlin-discovered-alleles-yaml
  • mlin-discovery-bias00
  • mlin-discovery-unification-quality
  • mlin-docker-pr-build
  • mlin-dv-noncalled
  • mlin-dv-partial-data
  • mlin-dv-pl
  • mlin-etl-folders
  • mlin-fine-grain-RNC
  • mlin-fix-unification-model
  • mlin-format-fields
  • mlin-format-from-info
  • mlin-genotype-revision
  • mlin-genotype-revision-ARCHIVED
  • mlin-genotype-revision-simplified
  • mlin-genotyper-beta2
  • mlin-genotyper-log-stalls
  • mlin-genotyper-rnc
  • mlin-gvcf-manifest
  • mlin-gvcf-symbolic-assumption
  • mlin-inconsistent-trim
  • mlin-issue168
  • mlin-jemalloc-tuning
  • mlin-measure-loss
  • mlin-mem-thread-budgets
  • mlin-memoize-all-samples-sampleset
  • mlin-metadata-cache
  • mlin-milestone1-cli
  • mlin-min-dp
  • mlin-minAQ2
  • mlin-multistage-dockerfile
  • mlin-multithread-query-test
  • mlin-multithread-scalability
  • mlin-multithread-scalability2
  • mlin-overlap-compactions-discovery
  • mlin-placeholder-gvcf-genotyper
  • mlin-pseudo-ref-records
  • mlin-range-bcf-end
  • mlin-readme
  • mlin-reduce-residuals
  • mlin-ref-PL
  • mlin-refactor-datacache-again
  • mlin-refactor-ingestion-exceptions
  • mlin-relax-unifier
  • mlin-remove-loss-tracking
  • mlin-reorder-format
  • mlin-residual-containing-range
  • mlin-revise-allele-pruning
  • mlin-revise-homalt
  • mlin-revise11
  • mlin-rocksdb-upgrade
  • mlin-rockskeyvalue
  • mlin-rockskeyvalue-config
  • mlin-sample-count
  • mlin-sampleset-consistency
  • mlin-sampleset-range
  • mlin-service-abort-operations
  • mlin-shorten-keys
  • mlin-simplify-range_of_bcf
  • mlin-skip-index
  • mlin-spdlog
  • mlin-squeeze
  • mlin-star-allele
  • mlin-strelka2
  • mlin-travis-docker
  • mlin-travis-modernization
  • mlin-travis-release
  • mlin-travis-valgrind
  • mlin-trim-uncalled-alleles
  • mlin-tweak-build
  • mlin-unification-alt-dna
  • mlin-unification-tests-1109
  • mlin-unified-site-yaml-parser
  • mlin-unifier-allele-frequencies
  • mlin-unifier-max-alleles
  • mlin-unifier-memory-usage
  • mlin-unifier-prefer-small-alleles
  • mlin-universal-compaction
  • mlin-unrepresentable-symbolic-allele
  • mlin-update-getting-started
  • mlin-update-spdlog
  • mlin-upgrade-capnp
  • mlin-variant-qual
  • mlin-weCall-calibration
  • mlin-wecall
  • mlin-wip
  • mlin-workaround-neg-PL
  • mlin-xAtlas-calibration
  • mlin-xAtlas-wip
  • mlin-xatlas
  • mlin-zstd
  • mlin/GxS
  • mlin/dv-prior-calibration
  • mlin/ghci
  • mlin/test-gvcf-norm
  • mlin/top2-half-calls
  • mlin20160319
  • mlin_minGQ
  • one_pass
  • orodeh-long-confidence-intervals
  • orodeh-profiling
  • orodeh-vcf-shard-merge
  • orodeh-vcf-shard-merge-bgzip
  • orodeh-vcf-shard-merge-mt-bgzip
  • orodeh_allele_discovery_in_first_phase
  • orodeh_capnp
  • orodeh_capnp_debug
  • orodeh_capnp_debug_II
  • orodeh_capnp_debug_III
  • orodeh_cleanup_unify_and_discover
  • orodeh_config_param_for_new_subcommands
  • orodeh_config_yaml_serialization
  • orodeh_discovered_alleles_parallel_load
  • orodeh_dynamic_jemalloc
  • orodeh_ensure_jemelloc
  • orodeh_experiments
  • orodeh_expose_bucket_size_arg
  • orodeh_gvcf_ingest_validation
  • orodeh_lambda_predicate_for_queries
  • orodeh_malloc_perf
  • orodeh_malloc_static
  • orodeh_mt_bgzip
  • orodeh_one_db_pass_genotyper
  • orodeh_perf_lxc
  • orodeh_profiling
  • orodeh_report_bad_yaml_file
  • orodeh_separate_discover_phase
  • orodeh_simple_public_cli
  • orodeh_stream_yaml
  • orodeh_unify_sites_as_stage
  • orodeh_vcf_compare
  • orodeh_yaml_stream_unify_sites
  • perf_32_cpu
  • perf_prof_with_bcf_cache
  • performance_profiling
  • profiling_WIP
  • revert-111-orodeh_capnp_debug_III
  • revert-122-mlin-skip-index
  • split_ch2
  • split_chrom
  • split_gvcf_into_chromosomes
  • tedyun-fixaq2zero
  • test_travis_release
  • translate-genotype-REF-check
  • travis-master-pr-builds
  • ubcf
  • ubcf_cleanup
  • unify_alleles_on_vector_inputs
  • update_bgzip
  • v0.1.0
  • v0.2.0
  • v0.3.0
  • v0.3.1
  • v0.3.2
  • v0.3.3
  • v0.5.0
  • v0.5.x
  • v0.6.1
  • v1.0.0
  • v1.0.1
  • v1.0.2
  • v1.1.0
  • v1.1.1
  • v1.1.10
  • v1.1.11
  • v1.1.12
  • v1.1.12-1
  • v1.1.2
  • v1.1.3
  • v1.1.4
  • v1.1.5
  • v1.1.6
  • v1.1.7
  • v1.1.8
  • v1.1.9
  • v1.1.x
  • v1.2.0
  • v1.2.0-pre.0
  • v1.2.1
  • v1.2.2
  • v1.2.3
  • v1.2.4
  • v1.2.5
  • v1.2.6
  • v1.2.7
  • vectorize_applet
  • ymen-format-field-defaults
  • ymen-format-field-ignore-ref
  • ymen-format-fields
  • ymen-format-fields-clear-on-rnc
  • ymen-genotyper-v0.1
  • ymen-genotyper-v1
  • ymen-prep-for-genotype-v1
  • ymen-trim-alts
  • ymen-yaml-test-case
  • ymen_genotyper_add_yml_tests
  • zero_copy_bucket_scan

pending completion
2174

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travis-ci

mlin
bump dependencies

4333 of 4639 relevant lines covered (93.4%)

1919441.09 hits per line

Relevant lines Covered
Build:
Build:
4639 RELEVANT LINES 4333 COVERED LINES
1919441.09 HITS PER LINE
Source Files on master
  • Tree
  • List 32
  • Changed 16
  • Source Changed 1
  • Coverage Changed 16
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2174 master bump dependencies push 13 Aug 2020 11:08AM UTC mlin travis-ci pending completion  
2173 master Add preset 'DeepVariant_unfiltered', analogous to 'gatk_unfiltered', etc. push 13 Aug 2020 09:04AM UTC mlin travis-ci pending completion  
2169 master Fix typo AQ-->AF in error message It should be possible to distinguish update failure for AF/AQ now. push 30 May 2020 10:59AM UTC mlin travis-ci pending completion  
2167 master maintenance: deps, python3, error messages push 27 May 2020 07:30AM UTC mlin travis-ci pending completion  
2163 master prevent CI timeout push 22 Feb 2020 07:31PM UTC mlin travis-ci pending completion  
2161 master prevent CI timeout push 22 Feb 2020 09:52AM UTC mlin travis-ci pending completion  
2147 master RocksDB v6.6.4 push 17 Feb 2020 09:36PM UTC mlin travis-ci pending completion  
2145 master add weCall_unfiltered configuration preset push 17 Feb 2020 02:44AM UTC mlin travis-ci pending completion  
2144 master Update README.md push 12 Feb 2020 03:18AM UTC web-flow travis-ci pending completion  
2143 master bump dependency revisions push 24 Jan 2020 07:57AM UTC mlin travis-ci pending completion  
See All Builds (1754)
  • Repo on GitHub
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