angelolab / ark-analysis
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Add a section to address restarting WSL in case of mounting issues (#664)

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Builds Branch Commit Type Ran Committer Via Coverage
5975 master Add a section to address restarting WSL in case of mounting issues (#664) push web-flow travis-ci-com pending completion  
5958 master Notebook Reorganization (#648) * change notebook names * Update README.md * Text changes for clustering description * testbook fix * Readme adjustements, waiting for Pixie preprint * Add PIxie preprint * added pixie to citation ... push web-flow travis-ci-com pending completion  
5926 master Docker Tags in line with ark-analysis Version (#636) * docker argument adjustments in .travis.yml * no pypi upload * adjust docker part * adjust docker part * docker hell * docker hell2 * docker fix test * travis fix * rev... push web-flow travis-ci-com pending completion  
5899 master Split up `som_utils.py` into separate modules for pixel and cell clustering (#662) * Initial commit of pixel/cell clustering split * Standardize naming as pixel_cluster and cell_cluster to avoid SOM/meta confusion * Move colormap generator ... push web-flow travis-ci-com pending completion  
5836 master Ensure channel norm and pixel norm files get re-computed if a new set of channels are provided (#654) * Initial commit of normalization updates * Remove capsys call * Provide more robust support by resetting entire pixel_output_dir if new s... push web-flow travis-ci-com pending completion  
5830 master Add nuclear filtering functionality to pixel clustering pipeline (#653) * Add nuclear mask filtering to som_utils * Add nuclear filtering method to pixel clustering notebook * Print informative message instead of error if seg_dir is None, a... push web-flow travis-ci-com pending completion  
5763 master Added Batching Functionality to Pixel Mask Generation and FOV Saving (#643) * batching generate_pixel_cluster_mask * added batch_size arg to the pixel_clustering template notebook * added `batch_size` to save_fov_images * fixed test_save... push web-flow travis-ci-com pending completion  
5740 master Create Mantis Project Function (#641) * added mantis function * mantis_project made * adjusted docstring * adjsuted docstring * fixed dim parameter in _generate_seg_labels call * docstring fix * docstring fix * docstring test... push web-flow travis-ci-com pending completion  
5678 master save fov images as int16 (#644) push web-flow travis-ci-com pending completion  
5669 master Remove Rplots.pdf (#638) * remove Rplots.pdf * also remove from cell clustering push web-flow travis-ci-com pending completion  
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