angelolab / ark-analysis

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• gh-readonly-queue/main/pr-1159-301e344f0ffbedafaad282c52c801e7713272f85
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• gh-readonly-queue/main/pr-998-cb8084748a94e9004e9685075cdf8e7d783814d3
• gh-readonly-queue/main/pr-999-e663b04156d6b5e299d33a48dfc3314df6601d5d
• git_install_instructions
• github-actions-from-template
• global-settings
• google-drive-documentation
• google-drive-hotfix
• google-drive-integration
• ignore_hidden_files
• improve_jupyter_launch
• initial_deploy
• input_validation
• integrated_plotting
• integrated_plotting_function
• integrated_plotting_functions
• ipympl_fix
• iter_viz
• iterable_dtypes_fix
• jitter_signal
• jupyter_lab
• k_means
• k_means_mat
• kmeans_neighborhood_nb_update
• kmeans_nh_no_excluded_channels_fix
• kmeans_seed
• landing_doc
• lda_metrics
• line-length-fix
• line_length
• load_tree_wrong_chan_name
• load_utils/load_tif
• load_utils_fix
• load_utils_float_conversion_warning
• local-updating
• localize-mibitiff
• low_contrast_warning
• m1_ark_setup
• main
• mantis/generalize_seg_mask_suffix
• mantis/img_suffix
• mantis_assign_cells
• mantis_dir
• mantis_seg_suffix
• marker_verify
• mask_index_fix
• master
• meta_dup
• meta_zscore_slider
• metacluster_gui
• metacluster_width
• mibilib-workaround
• mibitiff-throw-error
• mibitiff_cell_mat
• mixing_score
• modify_nuc_labels
• morph_add
• morph_doc
• morph_index_fix
• move_meta_rename
• multiarch_docker
• nbsphinx_delete
• neigh_index
• neighbor_notebook
• neighborhood_progress
• new_cluster_boost
• new_rand_mod
• new_som
• next_release_v0.4.1
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• next_release_v0.4.3
• next_release_v0.4.4
• next_release_v0.5.0
• next_release_v0.5.1
• ngreenwald-patch-1
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• no-contrast-check
• normal_transform
• notebook_reorg
• notebook_tests
• notebook_update_test_bash_cmd
• nuc_filter
• nuc_memb_viz
• nuclear_counts_false
• nuclear_fix
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• ome_tiff
• optimization/compressed_csvs
• optimize_df_merging
• overlay_cmap
• overwrite_option
• parallel_som
• patch_contributing
• patch_kmeans_min
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• pix_preprocessing
• pixel_channel_mem
• pixel_mask
• pixel_mask_batches
• pixel_mask_boost
• pixel_mask_index
• pixel_overlay_patch
• pixel_path_fix
• pixel_som_verify_fix
• pixie/filter_with_nuclear_mask
• pixie_authorship
• pixie_clean
• plot_clustering_result
• plot_overlay_fix
• plot_utils_clean
• point_remove
• post_clustering
• preprocess_pixie_cell
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• prog-bar-fix
• progress_bars
• propagate_fovs
• py_consensus
• pyflowsom_add
• pypi_bugfix
• pypi_debug
• pypi_name
• pypi_req_fix
• pypi_setup
• python-3.6
• python-3.7
• python-3.8+AppleSilicon_support
• python_3.7
• python_3.7_version_download_fix
• qc_metric_moly
• qc_metrics
• r_som
• rand_mod
• readd_docker_update
• readme-clarification
• readme/pipeline_flowchart/pixie
• readme_badges
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• rebuild_docker
• refactor_dist_mat
• regionprops_extension
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• remap
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• remove_deterministic
• remove_file_extension_fix
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• spatial_LDA
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• spatial_enrichment_loading
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• sphinx_setup
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• split_nuclei_bugfix
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• unbatch_cell_table
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• validate_path_update
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Build # 6459

Build Type

push

travis-ci-com

Committed by web-flow

Commit Message

Next Release v0.4.2 (#721)

* small dataset loading fix

* bumped version from 0.4.1 -> 0.4.2

* test fix

* remove unnecessary print

* notebook path fix

* updated start_docker version

* input_data -> image_data

* several links and badges point to master instead of main. Added docs on how to update ark-analysis within the docker image.

* some sphinx whitespace fix

* force readthedocs to build again

* dockerfile change

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