angelolab / ark-analysis / 5830

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Add nuclear filtering functionality to pixel clustering pipeline (#653)

* Add nuclear mask filtering to som_utils

* Add nuclear filtering method to pixel clustering notebook

* Print informative message instead of error if seg_dir is None, and check for valid seg_dir if provided

* Remove extra print statement

* Update ark/phenotyping/som_utils.py

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

18 of 18 new or added lines in 1 file covered. (100.0%)

2756 of 2927 relevant lines covered (94.16%)

0.94 hits per line