angelolab / ark-analysis

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• example_dataset/nb2
• condense_label_save
• v0.4.2
• settings_name_update
• docker_start_add
• arrow_patch
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• rtd_path
• pypi_req_fix
• next_release_v0.4.3
• neighborhood_progress
• v0.4.3
• example_dataset/nb3
• optimize_df_merging
• example_dataset/nb4
• example_dataset/merged_dataset
• remove_MIBItiff
• remove_mibitiff_in_notebooks
• patch_tests
• add_single_proc
• notebook_update_test_bash_cmd
• example_dataset/caching
• kmeans_nh_no_excluded_channels_fix
• notebook_tests
• example_dataset/local_caching
• validate_paths_usage
• optimization/compressed_csvs
• adjust_load_tiled_imgs
• tiff_standard
• next_release_v0.4.4
• refactor_dist_mat
• v0.4.4
• ci/wheel_building
• docs/cell_table_info
• pixie_authorship
• feature_0_1
• patch_mask_gen
• patch_kmeans_min
• ome_tiff
• subset_channel_avg
• neigh_index
• tmi/utils
• example_dataset/overwrite_existing_docs
• mantis/generalize_seg_mask_suffix
• example_dataset/spatial_analysis
• kmeans_seed
• create_mantis_proj_dup
• git_install_instructions
• py_consensus
• input_validation
• mixing_score
• mantis/img_suffix
• seg_dir_cluster
• pixie_clean
• pyflowsom_add
• readme/pipeline_flowchart/pixie
• mantis_seg_suffix
• colorbar_scale
• example_dataset/cropped_fov0
• v0.5.0
• next_release_v0.5.0
• load_utils/load_tif
• pixie/filter_with_nuclear_mask
• preprocess_pixie_cell
• 883-unable-to-create-overlay-image-using-mesmer-output-tiff-and-input-tiff-images
• next_release_v0.5.1
• v0.5.1
• start_cell_cluster
• remove_deterministic
• cell_99
• cell_table_slow
• z_slider_fix
• retrain_pixel_som
• propagate_fovs
• gh-readonly-queue/main/pr-894-a4b2841ce9600938f2f8e6aee04e925008c10858
• dependabot/pip/docs/ipython-8.10.0
• gh-readonly-queue/main/pr-908-1f3859f53982d9c1dece38f92af570d99b8b4466
• 857-refactor-mask-generation
• cbar_minor_ticks
• overwrite_option
• gh-readonly-queue/main/pr-935-39089035bea2d2167380f0b22881d8f9b4a3f515
• gh-readonly-queue/main/pr-942-7b37816d667c39e4fbad124a22fe273a69728520
• gh-readonly-queue/main/pr-951-ad4e42fd7bf84a971b9719618b073d887746f6c8
• gh-readonly-queue/main/pr-953-8293e1fbf57ea22cb59a09fa46d61a461f57d5ed
• gh-readonly-queue/main/pr-955-f9a412b454ec0e25e336cd99607312b89776ece9
• gh-readonly-queue/main/pr-946-f6e0d2a56b0231502fc61cf0a65ce2d7a2d6b644
• gh-readonly-queue/main/pr-959-8e5366783c2ae5b26ff9cad32f2a198f841815f5
• gh-readonly-queue/main/pr-960-68a3d954090f6ec36d066bca4928e32772b390db
• gh-readonly-queue/main/pr-939-8d28c2cdcc76eded9a9da4a81b1e5ee2b5424ece
• gh-readonly-queue/main/pr-966-ac64b0e8b6e3df54de30e5a9fc20f5d132b51fed
• gh-readonly-queue/main/pr-978-675a7e1f2ee3c8faa16a69800ee2271d355474a0
• gh-readonly-queue/main/pr-983-061a128886947bf3b0c22f30623fb6e0fe5e647e
• gh-readonly-queue/main/pr-981-dc9854979077335b04af85a0030f301bb2d7365b
• gh-readonly-queue/main/pr-973-79177931bdfaa98cae63b0a33c6aee289f93fc9a
• fix_np_float
• mask_index_fix
• gh-readonly-queue/main/pr-994-aa4f11452cf1b2dbdb93fb0d1378aabc892cedd3
• gh-readonly-queue/main/pr-998-cb8084748a94e9004e9685075cdf8e7d783814d3
• gh-readonly-queue/main/pr-1006-d547efb338cda0f2948052efd6045392632fd9ac
• gh-readonly-queue/main/pr-1007-d7bbe1501d4e8828ca797e7ef7cf7afa2832811b
• gh-readonly-queue/main/pr-993-c0c31edac976dbb6ecda5d101de1cbd3a880cc78
• meta_dup
• gh-readonly-queue/main/pr-999-e663b04156d6b5e299d33a48dfc3314df6601d5d
• gh-readonly-queue/main/pr-991-2af302d202e64c63d0a19bc0fba40527302adca5
• gh-readonly-queue/main/pr-1011-5acbee26a2b698fc47d2a0c3428f35ad115e4200
• gh-readonly-queue/main/pr-1025-e604956d7c9e86a018a45df13d78d8eff0d33c17
• gh-readonly-queue/main/pr-1012-67a1a589c35485d7a534f87c1b48393a3681fff7
• gh-readonly-queue/main/pr-1027-7823f9d92dc3d22aebb861c93b7d40404af3e077
• gh-readonly-queue/main/pr-1031-94e63630fc0349bde4b40fb0a413c70c04825881
• gh-readonly-queue/main/pr-1033-82b93128fc98fbe2d9a3d867ea2dfeb7c552fc44
• gh-readonly-queue/main/pr-1047-2ba38f28910fb3570ae866cd95518deb1f1733f5
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• gh-readonly-queue/main/pr-1051-963763fd11afcd58f76bc187126c212fd3d52025
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• gh-readonly-queue/main/pr-1126-dac262e4359a36476fb5e6b74f65e1538ad58284
• gh-readonly-queue/main/pr-1130-a3c08d67a17b40d9a71fdacf597853d1a3e359c7
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• gh-readonly-queue/main/pr-1139-c87731413a5584fef127b73b8468e6cd46a2e662
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• gh-readonly-queue/main/pr-1158-cb8ccdb9c18ab8b8287149f0ab13eeb3366d3593
• docker_doc_deprecate

Merge branch 'main' into zero_col_cell