11312163016

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
11312163016	alignment-refactor	Merge pull request #2039 from KatherineCaley/alignment-refactor API: remove strand arg, modify offset handling for Alignments	push	13 Oct 2024 06:47AM UTC	web-flow	github	92.04
11312163017	develop	DOC: described revised coevolution code in changelog, readme and docs	push	13 Oct 2024 06:44AM UTC	GavinHuttley	github	91.94
11245815204	dependabot/pip/ruff-0.6.9	Bump ruff from 0.6.7 to 0.6.9 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.6.7 to 0.6.9. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h...	push	09 Oct 2024 12:22AM UTC	web-flow	github	92.11
11245815213	dependabot/pip/numpy-2.1.2	Bump numpy from 2.0.1 to 2.1.2 Bumps [numpy](https://github.com/numpy/numpy) from 2.0.1 to 2.1.2. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Co...	push	09 Oct 2024 12:24AM UTC	web-flow	github	92.1
11171541415	dependabot/pip/ruff-0.6.8	Bump ruff from 0.5.7 to 0.6.8 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.5.7 to 0.6.8. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h...	push	04 Oct 2024 12:07AM UTC	web-flow	github	92.11
11171541409	develop	MAINT: new_moltype IUPAC symbol type consistency [CHANGED] We had a tuple, list and frozen set between DNA, RNA and PROTEIN IUPAC characters! Now all are tuples, so their order is unchanged between runs and immutable.	push	04 Oct 2024 12:07AM UTC	GavinHuttley	github	92.1
11171393938	develop	TST: actually save the tests! [NEW] refactored tests to pytest and added new ones checking annotation_offset usage [CHANGED] address code review issue	push	03 Oct 2024 11:49PM UTC	GavinHuttley	github	92.1
11171203118	develop	API: add annotation_offset parameter to the make_seq and load_seq functions [CHANGED] explicitly test this and resolve comment on another test	push	03 Oct 2024 11:27PM UTC	GavinHuttley	github	92.11
11156677042	develop	API: change setting of annotation_offset and SeqView.offset [CHANGED] the annotation_offset attribute on sequences is now set directly on the SeqView object (both old and new sequence modules). You can no longer assign the annotation_offset a...	push	03 Oct 2024 06:03AM UTC	GavinHuttley	github	92.1
11115938966	dependabot/pip/ruff-0.6.7	Bump ruff from 0.5.7 to 0.6.7 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.5.7 to 0.6.7. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h...	push	01 Oct 2024 12:00AM UTC	web-flow	github	92.11
11115938955	develop	ENH: simplify construction of DictArray and DistanceMatrix [NEW] DictArray.from_array_names: construct a DictArray directly from a numpy array and names. The number of series of names must match the dimensions of the array. [NEW] Distanc...	push	30 Sep 2024 11:58PM UTC	GavinHuttley	github	92.11
10932519143	develop	MAINT: address codacy issues	push	19 Sep 2024 01:09AM UTC	GavinHuttley	github	92.11
10932480306	develop	DEV: added changelog snippet	push	19 Sep 2024 01:01AM UTC	GavinHuttley	github	92.11
10932454327	develop	BUG: using new IndelMap methods eliminates shared gaps for dotplots, fixes #2006	push	19 Sep 2024 12:59AM UTC	GavinHuttley	github	92.11
10931942122	develop	MAINT: improve dosctrings	push	19 Sep 2024 12:07AM UTC	GavinHuttley	github	92.11

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