GavinHuttley / cogent3
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develop: 92%

LAST BUILD BRANCH: alignment-refactor
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coverage: 92.037% (-0.001%) from 92.038%
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Merge pull request #2039 from KatherineCaley/alignment-refactor

API: remove strand arg, modify offset handling for Alignments

9 of 11 new or added lines in 1 file covered. (81.82%)

512 existing lines in 18 files now uncovered.

33715 of 36632 relevant lines covered (92.04%)

11.04 hits per line

Relevant lines Covered
36632 RELEVANT LINES 33715 COVERED LINES
11.04 HITS PER LINE
Source Files on develop

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
11312163016 alignment-refactor Merge pull request #2039 from KatherineCaley/alignment-refactor API: remove strand arg, modify offset handling for Alignments push web-flow github
92.04
11312163017 develop DOC: described revised coevolution code in changelog, readme and docs push GavinHuttley github
91.94
11245815204 dependabot/pip/ruff-0.6.9 Bump ruff from 0.6.7 to 0.6.9 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.6.7 to 0.6.9. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h... push web-flow github
92.11
11245815213 dependabot/pip/numpy-2.1.2 Bump numpy from 2.0.1 to 2.1.2 Bumps [numpy](https://github.com/numpy/numpy) from 2.0.1 to 2.1.2. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Co... push web-flow github
92.1
11171541415 dependabot/pip/ruff-0.6.8 Bump ruff from 0.5.7 to 0.6.8 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.5.7 to 0.6.8. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h... push web-flow github
92.11
11171541409 develop MAINT: new_moltype IUPAC symbol type consistency [CHANGED] We had a tuple, list and frozen set between DNA, RNA and PROTEIN IUPAC characters! Now all are tuples, so their order is unchanged between runs and immutable. push GavinHuttley github
92.1
11171393938 develop TST: actually save the tests! [NEW] refactored tests to pytest and added new ones checking annotation_offset usage [CHANGED] address code review issue push GavinHuttley github
92.1
11171203118 develop API: add annotation_offset parameter to the make_seq and load_seq functions [CHANGED] explicitly test this and resolve comment on another test push GavinHuttley github
92.11
11156677042 develop API: change setting of annotation_offset and SeqView.offset [CHANGED] the annotation_offset attribute on sequences is now set directly on the SeqView object (both old and new sequence modules). You can no longer assign the annotation_offset a... push GavinHuttley github
92.1
11115938966 dependabot/pip/ruff-0.6.7 Bump ruff from 0.5.7 to 0.6.7 Bumps [ruff](https://github.com/astral-sh/ruff) from 0.5.7 to 0.6.7. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](h... push web-flow github
92.11
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