GavinHuttley / cogent3 / 5435708334

Builds Branch Commit Type Ran Committer Via Coverage
5435708334 develop DOC: get the annotation docs "passing" [CHANGED] they are not particularly coherent, but at least they're not failing push GavinHuttley github pending completion   set done
5435645834 develop STY: address issue raised codacy push GavinHuttley github
91.53
5435449571 develop MAINT: imnproved behaviour of copy_annotations() [CHANGED] only create a new db if the annotation_db attribute is None, this improves state (but does not entirely guarantee) consistency between the instance bound to an alignment and a bou... push GavinHuttley github pending completion   set done
5435376119 develop MAINT: Feature.union() Feature.name now derived in order provided push GavinHuttley github pending completion   set done
5430186491 develop MAINT: code tidy push GavinHuttley github pending completion   set done
5430167679 develop MAINT: fix error in adding seqid into old-style annotations [CHANGED] somehow added the code in the wrong place! And the test was incomplete. Both now fixed. push GavinHuttley github pending completion   set done
5428755203 develop TST: make custom tempdir [CHANGED] to test relative to the user, need to create the tempdir directly, since pytest does not allow specifying a one-off base directory for tmp push GavinHuttley github pending completion   set done
5428360916 develop DOC: changelog addition concerning b76ec153b push GavinHuttley github pending completion   set done
5419218747 develop MAINT: delete unused import push GavinHuttley github pending completion   set done
5419163926 develop MAINT: remove unneeded uses of sctype2char(float) push GavinHuttley github pending completion   set done
5398642535 develop DEV: mark the large lin rajan moret test as slow [NEW] added pytest.mark.slow, deocrated test_dist_matches_original_implementation_bigtree and don't evaluate that during github action runs [NEW] use `nox -s test_slow-{py version}` to exe... push GavinHuttley github pending completion   set done
5398327394 develop MAINT: remove unused variable push GavinHuttley github pending completion   set done
5398240614 develop TST: mark this persistently failing test on Ubuntu as xfail push GavinHuttley github pending completion   set done
5385682150 develop MAINT: better NotCompleted result from sp_score [CHANGED] The alignment quality sp_score relies on computing pairwise genetic distanxces. This can fail due to NaN's in those distances. Return a more informative NotCompleted object. push GavinHuttley github pending completion   set done
5373710659 develop MAINT: standardise handling app tree input argument, fixes #1485 push GavinHuttley github pending completion   set done