GavinHuttley / cogent3 / 5372417847

Builds Branch Commit Type Ran Committer Via Coverage
5372417847 develop MAINT: tidy in SeqKmers push GavinHuttley github pending completion   set done
5273575766 develop MAINT: make compatible with 3.8 push GavinHuttley github pending completion   set done
5260735309 develop ENH: improve performance of creating GenBankAnnotationDb [CHANGED] use the `executemany()` approach as per the Gff db class push GavinHuttley github pending completion   set done
5252591024 develop ENH: performance tweaking in creating GffAnnotationDb [CHANGED] while loop, popping records is slow! Also, using the cursor executemany() method halves the construction time push GavinHuttley github pending completion   set done
5250366202 develop ENH: improve performance of fasta parser [NEW] implemented 2 different parsers, one for when strict is True, which is the same as previously. The other for when strict is False. The latter checks only for blank lines. [CHANGED] the stric... push GavinHuttley github pending completion   set done
5206280312 develop BUG: overriding default optimiser args to model app works push Gavin Huttley github pending completion   set done
5195433684 develop MAINT: removed redundant imports push GavinHuttley github pending completion   set done
5195158023 develop BUG: the TN93 substitution model can now be deserialised, fixes #1471 push GavinHuttley github pending completion   set done
5184581152 develop MAINT: remove unused import push GavinHuttley github pending completion   set done
5184333546 develop MAINT: improve performance of MinimalFastaParser push Gavin Huttley github pending completion   set done
5166754158 develop MAINT: delete unused data file push GavinHuttley github pending completion   set done
5166606400 develop MAINT: update the gcg format parser [CHANGED] handles input as either file objects or list of strings push GavinHuttley github pending completion   set done
5130359681 develop MAINT: fixed a test push Gavin Huttley github
91.47
5130116765 develop TST: modify to make more robust on Windows push GavinHuttley github
91.47
5117913297 develop MAINT: delete dead function push GavinHuttley github pending completion   set done