broadinstitute / viral-ngs / 1013

Builds Branch Commit Type Ran Committer Via Coverage
1013 ct-gatk-wdl-locate handle when gatk jar is in subdir gatk 3.8-1 is packed as a bz2 such that when extracted the jar file is found within a subdirectory, in contrast to earlier versions where it is at the top level. This commit searches any subdirs for the jar and m... Pull #997 web-flow travis-ci-com pending completion   set done
1012 ct-gatk-wdl-locate handle when gatk jar is in subdir gatk 3.8-1 is packed as a bz2 such that when extracted the jar file is found within a subdirectory, in contrast to earlier versions where it is at the top level. This commit searches any subdirs for the jar and m... push tomkinsc travis-ci-com pending completion   set done
1011 master pin snakemake to 5.6.0 (#996) pin snakemake to 5.6.0 rather than >=5.2.0; known working in build https://travis-ci.com/broadinstitute/viral-ngs/jobs/247224610 push web-flow travis-ci-com pending completion   set done
1009 ct-pin-snakemake pin snakemake to 5.6.0 pin snakemake to 5.6.0 rather than >=5.2.0; known working in build https://travis-ci.com/broadinstitute/viral-ngs/jobs/247224610 push web-flow travis-ci-com pending completion   set done
1010 ct-pin-snakemake pin snakemake to 5.6.0 pin snakemake to 5.6.0 rather than >=5.2.0; known working in build https://travis-ci.com/broadinstitute/viral-ngs/jobs/247224610 Pull #996 web-flow travis-ci-com pending completion   set done
1008 v1.25.0 Merge pull request #995 from broadinstitute/dp-dxwdl bugfixes and deoptimize push web-flow travis-ci-com pending completion   set done
1007 master Merge pull request #995 from broadinstitute/dp-dxwdl bugfixes and deoptimize push web-flow travis-ci-com pending completion   set done
1006 dp-dxwdl comment out *all* parameter_meta for now Pull #995 web-flow travis-ci-com pending completion   set done
1005 dp-dxwdl comment out *all* parameter_meta for now push dpark01 travis-ci-com pending completion   set done
1004 dp-dxwdl bugfix: never assume same filesystem! always use shutil.copyfile instead of os.rename push dpark01 travis-ci-com pending completion   set done
1002 dp-dxwdl revert to v2 instance, comment out all streaming parameter_meta for now in kraken push dpark01 travis-ci-com pending completion   set done
1001 dp-dxwdl try and see what happens if we revert to v1 instance for kraken push dpark01 travis-ci-com pending completion   set done
999 master Merge pull request #994 from broadinstitute/dp-dxwdl dxWDL upgrade push web-flow travis-ci-com pending completion   set done
998 dp-dxwdl speling Pull #994 web-flow travis-ci-com pending completion   set done
997 dp-dxwdl speling push dpark01 travis-ci-com pending completion   set done