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pirl-unc / tsarina
60%

Build:
DEFAULT BRANCH: main
Repo Added 30 Mar 2026 02:33PM UTC
Token cWDZoMMnxGWk4q0htXspjgz97yrDDEWIi regen
Build 67 Last
Files 34
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LAST BUILD ON BRANCH main
branch: main
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  • main
  • add-refs-format-20260420
  • audit-hitlist-tsa-goal-20260420
  • cache-kmer-enumeration-20260420
  • close-tsarina-4-via-load-all-evidence
  • consolidate-iedb-drop-netmhcpan-shim
  • delegate-to-hitlist-proteome-kmer-set-20260422
  • docs/hitlist-data-and-viral-defaults
  • drop-local-aggregate-refs-20260420
  • feature/panel-ms-evidence-tiers
  • fix/curation-audit-fixes
  • fix/ms-evidence-normalization
  • fix/panel-ms-metrics
  • hitlist-1.15-pin-and-length-pushdown
  • hitlist-1.6.0-integration
  • ms-curation
  • refs-and-cache-integration-tests-20260421
  • simplify-species-kwargs-for-hitlist-1.9
  • spanning-pmhc-set-20260420
  • spanning-progress-20260421
  • spanning-test-polish-20260421
  • unify-kmer-enumeration-20260421
  • warn-binding-assays-on-cached-path

30 Apr 2026 12:45PM UTC coverage: 60.317% (+1.6%) from 58.738%
25166092230

push

github

web-flow
v1.2.4: add MS-tiered panel command (#38)

1295 of 2147 relevant lines covered (60.32%)

0.6 hits per line

Relevant lines Covered
Build:
Build:
2147 RELEVANT LINES 1295 COVERED LINES
0.6 HITS PER LINE
Source Files on main
  • Tree
  • List 34
  • Changed 4
  • Source Changed 0
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
25166092230 main v1.2.4: add MS-tiered panel command (#38) push 30 Apr 2026 12:46PM UTC web-flow github
60.32
25162891577 main v1.2.3: refresh hitlist data docs (#37) push 30 Apr 2026 11:29AM UTC web-flow github
58.74
25162745019 main v1.2.2: fix panel MS metrics (#36) push 30 Apr 2026 11:26AM UTC web-flow github
58.74
25143441762 main v1.2.1: centralize MS evidence and HLA normalization (#35) * v1.2.1: centralize MS evidence and HLA normalization * Centralize remaining MS evidence call paths push 30 Apr 2026 02:00AM UTC web-flow github
56.41
24857641153 main v1.2.0: bump hitlist pin to >=1.15.1 + --lengths pushdown with class-derived defaults (#30) - Bumps hitlist pin from >=1.14.2 to >=1.15.1, unlocking length_min/length_max on load_observations / load_binding / load_all_evidence (hitlist#118) plus ... push 23 Apr 2026 08:38PM UTC web-flow github
49.38
24797001780 main v1.1.0: delegate proteome k-mer walk to hitlist.proteome.proteome_kmer_set (closes #99) (#29) The proteome-walk primitive tsarina has been caching locally since v0.10.1 (then unified under _proteome_kmers in v1.0.1) is now available upstream as h... push 22 Apr 2026 07:01PM UTC web-flow github
48.8
24737563735 main v1.0.4: refs CLI smoke + merge-path coverage (#28) Tightens tsarina hits --format refs test coverage without touching production code. - test_cli_hits.py: +2 smoke tests for refs as an argparse choice (listed in --help; unknown values rejected... push 21 Apr 2026 05:47PM UTC web-flow github
49.23
24737461957 main v1.0.3: spanning progress indication (#27) Multi-minute tsarina spanning runs now emit progress messages on stderr instead of going silent during the scoring phase. Library stays quiet by default (opt-in via on_progress callback); CLI wires the s... push 21 Apr 2026 05:44PM UTC web-flow github
48.66
24737341473 main v1.0.2: spanning test polish — require_cta_exclusive routing, multi-length, CLI smoke (#26) Tightens test coverage on tsarina.spanning and tsarina.cli_spanning. No behavior change. - require_cta_exclusive=True/False routing tests track which of ... push 21 Apr 2026 05:42PM UTC web-flow github
47.52
24735655636 main v1.0.1: unify k-mer enumeration behind _proteome_kmers (#25) Collapses the three ad-hoc proteome-walk loops (peptides._non_cta_proteome_kmers, viral._human_proteome_kmers, and the two inline walks in viral.cancer_specific_viral_peptides) into a s... push 21 Apr 2026 05:04PM UTC web-flow github
47.41
See All Builds (67)

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