pirl-unc / tsarina / 26993966076

Builds Branch Commit Type Ran Committer Via Coverage
26993966076 main Document CTA scope (protein-coding only) + source provenance (closes #79) (#90) Resolves the two remaining #79 items, both already decided by existing design: - lncRNA/antisense scope: tsarina is protein-coding only (the biotype filter rejects... push web-flow github
71.28
26993926693 document-scope-provenance-79 Merge ccecb3d6a into 2c4ac94ad Pull #90 web-flow github
71.28
26985044433 main Resolve CTA synonyms in the panel selection path (#77) (#89) cta_symbol_for_alias landed for direct lookup, but the panel selection path (_normalize_cta_labels, used by --ctas / selection allowlist) still only matched HGNC symbols + group aliases... push web-flow github
71.28
26984997072 wire-alias-resolution-selection-77 Merge 687ec4310 into b10f089b9 Pull #89 web-flow github
71.28
26984410485 main Document CTA evidence tiers + add cta_healthy_tissue_ms_hits helper (#76) (#88) Two doc/API gaps that made it hard for consumers (e.g. vaxrank) to sanity-check CTA tiers and understand what drives a cautious tier. - docs/curation.md: add a "publ... push web-flow github
71.23
26984353418 document-evidence-tiers-ms-helper-76 Merge 74b274b02 into 7fd241d80 Pull #88 web-flow github
71.23
26984084988 main Backfill CTA Aliases from NCBI; add cta_symbol_for_alias resolution (#77) (#87) The Aliases column was ~96% empty, so lookups by common antigen names silently missed (NY-ESO-1, CT12.2, MAGE/GAGE historical symbols). - Populate Aliases for every ... push web-flow github
71.1
26984031028 backfill-aliases-resolution-77 Merge 59e8fc09b into 77fd48503 Pull #87 web-flow github
71.1
26978146178 main Untrack uv.lock; add to .gitignore (#86) uv.lock was committed unintentionally in #85. It is derived from pyproject.toml (deploy resolves deps fresh) and is not part of the published package. Remove it from tracking and gitignore it to prevent re... push web-flow github
70.87
26978071169 untrack-uv-lock Merge 54a55c1d1 into ff3b75551 Pull #86 web-flow github
70.87
26976504813 main Add XAGE1A/XAGE1B group + XAGE family alias backfill (#77) (#85) * Group XAGE1A/XAGE1B as one antigen + backfill XAGE/MAGEB6 aliases (#77) XAGE1A and XAGE1B encode the identical 81-aa XAGE-1 protein, so they are a single antigen at the pMHC leve... push web-flow github
70.87
26976435841 xage1-aliases-group-77 Merge eeba33995 into 8f91c07b1 Pull #85 web-flow github
70.87
26974594794 main Add MAGEB6 CTA; evaluate #79 dual-corroborated candidates (#84) tsarina#79 lists 10 CTA genes "corroborated by both CTexploreR and CTdatabase" as strong adds. Evaluated all 9 evaluable candidates against the real HPA filter (RNA reproductive-rest... push web-flow github
70.82
26974528360 add-mageb6-cta-79 Merge 051e011ab into c1216b93f Pull #84 web-flow github
70.82
26973453572 main Add real (non-mocked) hitlist integration smoke test (closes #82) (#83) Every other test mocks hitlist, so CI couldn't catch a break in the tsarina<->hitlist schema contract (e.g. the 1.30.46 gene-column split, the 1.30.57 cell_name split) — the ... push web-flow github
70.82