pirl-unc / tsarina / 27842421077

Builds Branch Commit Type Ran Committer Via Coverage
27842421077 cli-help-color Merge b1045f376 into 8512ef307 Pull #140 web-flow github
76.78
27833233926 main No CLI help line starts with '(' + guard test (#139) Full sweep of the rendered CLI output surface (every command's --help + the list/reference/error paths) for lines beginning with '('. At the standard 80-column width argparse wraps several help... push web-flow github
76.77
27833139178 cli-leading-paren-sweep Merge 6e5925b28 into 189538793 Pull #139 web-flow github
76.77
27825733072 main Export personalize as personalized_targets (no submodule shadow) + drop leading-paren CLI lines (#138) - Rename the headline function personalize() -> personalized_targets() so it can be exported from the top level (`from tsarina import persona... push web-flow github
72.84
27825492977 personalize-rename-cli-polish Merge ef35f7932 into de36e3512 Pull #138 web-flow github
72.84
27800981166 main Friendlier CLI + discoverable headline verbs + accurate docs (#137) Friendliness: - `tsarina --version` (matches hitlist; was missing). - Stale deprecation targets: cli_hits / spanning / cli docstring now say `tsarina build observations`, not t... push web-flow github
72.82
27800920183 friendliness-and-docs Merge a5bcd058c into 2296b6477 Pull #137 web-flow github
72.82
27800078173 main Fix NaN crash + NaN cutoff-bypass in tiering/panel; gate RNA-agreement bonus (#136) Three correctness fixes from the holistic review (regression tests added): - tiers: int(row.get("rna_somatic_detected_count", 0) or 0) raised on a present-but-... push web-flow github
73.06
27800021794 correctness-fixes Merge 29faf03cb into bcd339cd0 Pull #136 web-flow github
73.06
27791759046 main Harmonize data CLI with hitlist; reference_data delegates to hitlist registry (#135) CLI parity (tsarina data ~ hitlist data): - Add `available`, `refresh`, `info`, `fetch-all` subcommands (thin wrappers over the re-exported hitlist functions; ... push web-flow github
73.01
27791635214 cli-parity-reference-via-hitlist Merge 8d2423a6c into 257d116e0 Pull #135 web-flow github
73.01
27784381517 main Reuse hitlist download_to_file for reference fetch (progress + cache status) (closes #133) (#134) reference_data.download() delegated the transfer to datacache, which buffers the whole file in memory (requests.get().content) with no progress — a ... push web-flow github
73.97
27777731142 reference-fetch-reuse-hitlist Merge 4f271d145 into cb88e3791 Pull #134 web-flow github
73.97
27572742297 main Re-add NLRP9 as REPRODUCTIVE: somatic IHC is artifactual (closes #128) (#129) NLRP9 was held out of #125 pending an IHC-aware evaluation. Reviewed in #128: its broad somatic HPA IHC (27 tissues) is not real protein. It rests on a single low-tier ... push web-flow github
73.97
27572610794 finish-nlrp9-evaluation-128 Merge 515c079d4 into c93c8393a Pull #129 web-flow github
73.97