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pirl-unc / tsarina
77%

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DEFAULT BRANCH: main
Repo Added 30 Mar 2026 02:33PM UTC
Token cWDZoMMnxGWk4q0htXspjgz97yrDDEWIi regen
Build 239 Last
Files 38
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LAST BUILD ON BRANCH main
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  • add-cta-paralog-copies-93
  • add-filtered-alias
  • add-gage10-cta
  • add-mageb6-cta-79
  • add-placental-antigens
  • add-real-hitlist-integration-test
  • add-refs-format-20260420
  • add-xage2-lower-cta-thresholds
  • address-119-erv-relaxed-tier
  • address-69-memory-hotpaths
  • adopt-oncoref-cta-set
  • audit-hitlist-tsa-goal-20260420
  • audit-p3-hygiene
  • backfill-aliases-resolution-77
  • bump-hitlist-pin-1.30.49
  • bump-hitlist-pin-1.30.57
  • cache-kmer-enumeration-20260420
  • cancer-placenta-antigen-candidates
  • cap-confidence-114
  • cli-consolidation
  • cli-followup-hardening
  • cli-healthy-tissue-safety-screen
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  • cli-leading-paren-sweep
  • cli-parity-reference-via-hitlist
  • cli-reorg
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  • close-108-fragment-qc
  • close-tsarina-4-via-load-all-evidence
  • codex/ctag-display-label
  • codex/fix-xage-ms-counts
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  • codex/mhcflurry-full-batch-progress
  • consolidate-iedb-drop-netmhcpan-shim
  • correctness-fixes
  • cta-exclusive-ms-counts
  • cta-passes-filters-threshold-098
  • deconvolve-multiallelic-ms-evidence
  • delegate-to-hitlist-proteome-kmer-set-20260422
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  • drop-local-aggregate-refs-20260420
  • exclude-non-cta-conserved-genes-92
  • export-vital-organ-vocab-303
  • feature/panel-cta-safety-and-nyeso-group
  • feature/panel-ms-evidence-tiers
  • feature/panel-progress-summary-table
  • feature/panel-version-peptide-progress
  • feature/spanning-alias-help-smoke-tests
  • finish-nlrp9-evaluation-128
  • fix-gene-name-docstring
  • fix-mhcflurry-c1505-speed
  • fix-proteoform-mirror-sync-126
  • fix-test-suite-oom-mhcflurry-stub
  • fix/curation-audit-fixes
  • fix/ms-evidence-normalization
  • fix/panel-healthy-ms-gene-veto
  • fix/panel-ms-metrics
  • fix/panel-vital-ntpm-threshold
  • friendliness-and-docs
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  • group-identical-cta-peptide-panels
  • group-identical-cta-peptide-sets
  • handle-peptide-attribution-provenance
  • harden-confidence-test
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  • hitlist-1.15-pin-and-length-pushdown
  • hitlist-1.6.0-integration
  • main
  • ms-curation
  • panel-mage-safety-summary-sort
  • perf/memory-aware-test-workers
  • personalize-rename-cli-polish
  • proteoform-cta-groups
  • prune-dead-test
  • reference-data-cli
  • reference-data-datacache
  • reference-fetch-reuse-hitlist
  • refs-and-cache-integration-tests-20260421
  • regenerate-cta-table-current-hpa
  • rna97-and-h1-1-exclusion
  • sanity-fixes
  • simplify-species-kwargs-for-hitlist-1.9
  • sort-cta-coverage-first
  • spanning-pmhc-set-20260420
  • spanning-progress-20260421
  • spanning-test-polish-20260421
  • tcga-prevalence-evidence-and-summary
  • unify-kmer-enumeration-20260421
  • untrack-uv-lock
  • warn-binding-assays-on-cached-path
  • wire-alias-resolution-selection-77
  • xage1-aliases-group-77

10 Jul 2026 04:57PM UTC coverage: 76.943% (+0.2%) from 76.773%
29109291432

push

github

web-flow
Adopt oncoref CTA defaults (#142)

* Adopt oncoref CTA defaults

* Use oncoref for proteoform mirror check

2930 of 3808 relevant lines covered (76.94%)

0.77 hits per line

Relevant lines Covered
Build:
Build:
3808 RELEVANT LINES 2930 COVERED LINES
0.77 HITS PER LINE
Source Files on main
  • Tree
  • List 38
  • Changed 7
  • Source Changed 0
  • Coverage Changed 7
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
29109291432 main Adopt oncoref CTA defaults (#142) * Adopt oncoref CTA defaults * Use oncoref for proteoform mirror check push 10 Jul 2026 04:59PM UTC web-flow github
76.94
29108782646 adopt-oncoref-cta-set Merge ad41abc33 into b1a7178db Pull #142 10 Jul 2026 04:50PM UTC web-flow github
76.94
29106551340 adopt-oncoref-cta-set Merge 920255a8e into b1a7178db Pull #142 10 Jul 2026 04:13PM UTC web-flow github
76.94
27842421077 cli-help-color Merge b1045f376 into 8512ef307 Pull #140 19 Jun 2026 06:32PM UTC web-flow github
76.78
27833233926 main No CLI help line starts with '(' + guard test (#139) Full sweep of the rendered CLI output surface (every command's --help + the list/reference/error paths) for lines beginning with '('. At the standard 80-column width argparse wraps several help... push 19 Jun 2026 03:02PM UTC web-flow github
76.77
27833139178 cli-leading-paren-sweep Merge 6e5925b28 into 189538793 Pull #139 19 Jun 2026 03:00PM UTC web-flow github
76.77
27825733072 main Export personalize as personalized_targets (no submodule shadow) + drop leading-paren CLI lines (#138) - Rename the headline function personalize() -> personalized_targets() so it can be exported from the top level (`from tsarina import persona... push 19 Jun 2026 12:30PM UTC web-flow github
72.84
27825492977 personalize-rename-cli-polish Merge ef35f7932 into de36e3512 Pull #138 19 Jun 2026 12:27PM UTC web-flow github
72.84
27800981166 main Friendlier CLI + discoverable headline verbs + accurate docs (#137) Friendliness: - `tsarina --version` (matches hitlist; was missing). - Stale deprecation targets: cli_hits / spanning / cli docstring now say `tsarina build observations`, not t... push 19 Jun 2026 02:07AM UTC web-flow github
72.82
27800920183 friendliness-and-docs Merge a5bcd058c into 2296b6477 Pull #137 19 Jun 2026 02:05AM UTC web-flow github
72.82
See All Builds (239)

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