pirl-unc / tsarina
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LAST BUILD ON BRANCH main
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coverage: 30.938% (+0.3%) from 30.625%
Relevant lines Covered
1600 RELEVANT LINES 495 COVERED LINES
0.31 HITS PER LINE
Source Files on main

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
23993027878 main Bake MS restriction + safety flags into shipped CSV CSV now ships with pre-computed MS restriction from IEDB/CEDAR scan (hitlist 0.5.1 with broadened HLA filter including unresolved alleles): - CANCER_ONLY: 126 genes - RECURRENT_HEALTHY: 44 genes... push iskandr github
30.94
23992827915 main Fix human_only filter and add submission_id passthrough - iedb.py: Filter human_only on host (APC organism) instead of epitope source organism, matching hitlist's behavior. Viral peptides presented on human MHC are now correctly retained. - i... push iskandr github
30.63
23989515396 main Bump version to 0.4.2 push iskandr github
30.7
23989478630 main Add safety flags for brain, heart, lung, liver, pancreas RNA expression Flags expressed CTAs with >= 5 nTPM in safety-critical tissues. Adds per-safety-tissue max nTPM columns (rna_brain_max_ntpm, etc.) and a semicolon-separated safety_flags colu... push iskandr github
30.7
23984591722 main Fix curation audit issues: filter gating, PMID passthrough, stale exports (#2) Fixes from tasks/curation_tissue_logic_report.md audit: - #1: Pass pmid and mhc_restriction to hitlist classify_ms_row in tsarina/iedb.py scan_public_ms() and profi... push web-flow github
30.2
23984589248 fix/curation-audit-fixes Merge 33fb1777f into b696671c1 Pull #2 web-flow github
30.2
23980708934 main Bump version to 0.4.0 push iskandr github
30.17
23946743974 main Add tiers system, auto-resolve IEDB/CEDAR, genes filter - Three-axis restriction tiers (protein, RNA, MS) with cross-source synthesis into unified restriction + confidence - CTA_detailed_evidence() auto-resolves IEDB/CEDAR paths from hitlist ... push iskandr github
30.17
23757237965 main Merge pull request #1 from pirl-unc/ms-curation Add MS evidence curation with PMID overrides and tissue classification push web-flow github
21.11
23757197852 ms-curation Merge 7e6b2e05c into f1aa6a76a Pull #1 web-flow github
21.11
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