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• add-cta-paralog-copies-93
• add-filtered-alias
• add-gage10-cta
• add-mageb6-cta-79
• add-placental-antigens
• add-real-hitlist-integration-test
• add-refs-format-20260420
• add-xage2-lower-cta-thresholds
• address-119-erv-relaxed-tier
• address-69-memory-hotpaths
• adopt-oncoref-1.25
• adopt-oncoref-cta-set
• analysis/vaccine-evidence-coverage-tradeoffs
• audit-hitlist-tsa-goal-20260420
• audit-p3-hygiene
• backfill-aliases-resolution-77
• bump-hitlist-pin-1.30.49
• bump-hitlist-pin-1.30.57
• cache-kmer-enumeration-20260420
• cancer-placenta-antigen-candidates
• cap-confidence-114
• chore/develop-sh-tracks-sibling-checkouts
• cleanup/hitlist-159-dead-weight
• cli-consolidation
• cli-followup-hardening
• cli-healthy-tissue-safety-screen
• cli-help-color
• cli-leading-paren-sweep
• cli-parity-reference-via-hitlist
• cli-reorg
• cli-reorg-followup
• cli-startup-and-cleanup
• close-108-fragment-qc
• close-tsarina-4-via-load-all-evidence
• codex/ctag-display-label
• codex/docs-structure-audit
• codex/fix-xage-ms-counts
• codex/live-hitlist-ms-panel
• codex/mhcflurry-full-batch-progress
• codex/oncoref-single-cta-authority
• consolidate-iedb-drop-netmhcpan-shim
• correctness-fixes
• cta-exclusive-ms-counts
• cta-passes-filters-threshold-098
• data-cli-consistency
• deconvolve-multiallelic-ms-evidence
• delegate-to-hitlist-proteome-kmer-set-20260422
• docs-refresh
• docs/120-herv-coverage
• docs/hitlist-data-and-viral-defaults
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• document-120-hervk-scope
• document-evidence-tiers-ms-helper-76
• document-scope-provenance-79
• drop-local-aggregate-refs-20260420
• exclude-non-cta-conserved-genes-92
• export-vital-organ-vocab-303
• feat/cta-vaccine-design
• feat/one-coding-gene-universe
• feat/vaccine-magea4-supported-ten
• feat/vaccine-summary-website
• feature/canine-vaccine-policy
• feature/ms-evidence-plots
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• finish-nlrp9-evaluation-128
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• refs-and-cache-integration-tests-20260421
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• sanity-fixes
• simplify-species-kwargs-for-hitlist-1.9
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• spanning-pmhc-set-20260420
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• untrack-uv-lock
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• wire-alias-resolution-selection-77
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Build # 41166543124

Build Type

push

github

Committed by web-flow

Commit Message

Load pandas/oncoref lazily in the CLI and tidy dispatch, deprecations and help (#228)

* Make data CLI errors uniform, flag missing registered files, add fetch --dry-run and --json

Fixes #222, #223 (tsarina side), #224. Bumps to 1.37.0.

Claude-Session: https://claude.ai/code/session_01JHJhwgtB2p4iMK1gxoD7Js

* Load pandas/oncoref lazily in the CLI and tidy dispatch, deprecations and help

Fixes #225, #226. Bumps to 1.37.1. Stacked on #227.

Claude-Session: https://claude.ai/code/session_01JHJhwgtB2p4iMK1gxoD7Js

* Report dataset state from datacache via hitlist info instead of a path check

Claude-Session: https://claude.ai/code/session_01JHJhwgtB2p4iMK1gxoD7Js

* Limit startup test to oncoref; pandas is imported by hitlist in some releases

Claude-Session: https://claude.ai/code/session_01JHJhwgtB2p4iMK1gxoD7Js

Coverage Stats

5564 of 6641 relevant lines covered (83.78%)

0.84 hits per line