pirl-unc / tsarina

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• add-cta-paralog-copies-93
• add-filtered-alias
• add-gage10-cta
• add-mageb6-cta-79
• add-placental-antigens
• add-real-hitlist-integration-test
• add-refs-format-20260420
• add-xage2-lower-cta-thresholds
• address-119-erv-relaxed-tier
• address-69-memory-hotpaths
• adopt-oncoref-cta-set
• analysis/vaccine-evidence-coverage-tradeoffs
• audit-hitlist-tsa-goal-20260420
• audit-p3-hygiene
• backfill-aliases-resolution-77
• bump-hitlist-pin-1.30.49
• bump-hitlist-pin-1.30.57
• cache-kmer-enumeration-20260420
• cancer-placenta-antigen-candidates
• cap-confidence-114
• chore/develop-sh-tracks-sibling-checkouts
• cleanup/hitlist-159-dead-weight
• cli-consolidation
• cli-followup-hardening
• cli-healthy-tissue-safety-screen
• cli-help-color
• cli-leading-paren-sweep
• cli-parity-reference-via-hitlist
• cli-reorg
• cli-reorg-followup
• close-108-fragment-qc
• close-tsarina-4-via-load-all-evidence
• codex/ctag-display-label
• codex/docs-structure-audit
• codex/fix-xage-ms-counts
• codex/live-hitlist-ms-panel
• codex/mhcflurry-full-batch-progress
• codex/oncoref-single-cta-authority
• consolidate-iedb-drop-netmhcpan-shim
• correctness-fixes
• cta-exclusive-ms-counts
• cta-passes-filters-threshold-098
• deconvolve-multiallelic-ms-evidence
• delegate-to-hitlist-proteome-kmer-set-20260422
• docs-refresh
• docs/120-herv-coverage
• docs/hitlist-data-and-viral-defaults
• docs/plain-language-navigation
• docs/preserve-hla-allele-notation
• document-120-hervk-scope
• document-evidence-tiers-ms-helper-76
• document-scope-provenance-79
• drop-local-aggregate-refs-20260420
• exclude-non-cta-conserved-genes-92
• export-vital-organ-vocab-303
• feat/cta-vaccine-design
• feat/one-coding-gene-universe
• feat/vaccine-magea4-supported-ten
• feat/vaccine-summary-website
• feature/canine-vaccine-policy
• feature/ms-evidence-plots
• feature/neoantigen-ms-evidence-figures
• feature/panel-cta-safety-and-nyeso-group
• feature/panel-ms-evidence-tiers
• feature/panel-progress-summary-table
• feature/panel-proteoform-preferred-labels
• feature/panel-version-peptide-progress
• feature/personalize-cta-flagged-and-flexible-cli
• feature/personalize-progress-table-tpm-optional
• feature/personalize-proteoform-rollup-and-format-sniffing
• feature/proteoform-preferred-symbols
• feature/spanning-alias-help-smoke-tests
• finish-nlrp9-evaluation-128
• fix-gene-name-docstring
• fix-mhcflurry-c1505-speed
• fix-proteoform-mirror-sync-126
• fix-test-suite-oom-mhcflurry-stub
• fix/130-protein-evidence-regression
• fix/131-sun-candidate-coverage
• fix/132-oncoref-contract
• fix/146-actions-node24
• fix/160-cta-filter-diagnostics
• fix/184-compatible-development-installs
• fix/code-review-serotype-followups
• fix/curation-audit-fixes
• fix/epg5-minimal-epitope-mislabel
• fix/fetch-all-cache-output
• fix/fixture-tripwire-tolerates-library-gains
• fix/hitlist-1-55-2-mapping-cache
• fix/mhcflurry-panel-contract
• fix/ms-evidence-normalization
• fix/panel-healthy-ms-gene-veto
• fix/panel-ms-metrics
• fix/panel-vital-ntpm-threshold
• fix/review-target-safety
• fix/serotype-normalization-via-mhcgnomes
• fix/vaccine-project-aims
• fix/vaccine-species-aliases
• friendliness-and-docs
• group-identical-cta-paralogs
• group-identical-cta-peptide-panels
• group-identical-cta-peptide-sets
• handle-peptide-attribution-provenance
• harden-confidence-test
• harden-vital-organ-ms-screen
• hitlist-1.15-pin-and-length-pushdown
• hitlist-1.6.0-integration
• main
• ms-curation
• panel-mage-safety-summary-sort
• perf/memory-aware-test-workers
• personalize-rename-cli-polish
• proteoform-cta-groups
• prune-dead-test
• redesign/sequence-overlay-evidence-weight-visual
• reference-data-cli
• reference-data-datacache
• reference-fetch-reuse-hitlist
• refs-and-cache-integration-tests-20260421
• regenerate-cta-table-current-hpa
• rna97-and-h1-1-exclusion
• sanity-fixes
• simplify-species-kwargs-for-hitlist-1.9
• sort-cta-coverage-first
• spanning-pmhc-set-20260420
• spanning-progress-20260421
• spanning-test-polish-20260421
• tcga-prevalence-evidence-and-summary
• unify-kmer-enumeration-20260421
• untrack-uv-lock
• warn-binding-assays-on-cached-path
• wire-alias-resolution-selection-77
• xage1-aliases-group-77

Build # 37925797963

Build Type

push

github

Committed by web-flow

Commit Message

Resolve vaccine species names through PyEnsembl and clarify canine CTA sources (#214)

Coverage Stats

5432 of 6506 relevant lines covered (83.49%)

0.83 hits per line