26974356414
77%

Ran 04 Jun 2026 07:26PM UTC

Jobs 1

Files 29

Run time 1min

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Committed 04 Jun 2026 07:24PM UTC coverage: 76.832% (+0.02%) from 76.817%

Build # 26974356414

Build Type

push

github

Committed by

web-flow

Commit Message

v1.30.59: faster test suite — drop pytest -v + cache bulk parquet reads (#270)

Two independent test/CI speedups:

1. Remove '-v' from pytest addopts. The per-test verbose listing added
   log noise (and a little I/O) to every local + CI run without helping
   triage; --tb=short already gives concise failure context. Use
   'pytest -v' ad hoc when bisecting.

2. Memoize the bulk_proteomics.parquet read by (path, mtime_ns, size).
   Every load_bulk_peptides / load_bulk_proteomics call previously
   re-read the full parquet from disk; suites that call the loaders
   dozens of times (and deploy.sh --all) paid that I/O each time. Keying
   on the file signature makes repeated reads free while a rebuild
   (atomic temp+rename -> fresh mtime) busts the cache automatically.
   The public loaders all .copy() before filtering, so sharing the
   cached frame is safe; corrupt-file reads raise (not cached) and still
   fall back to packaged sources.

Local non-integration suite: ~93s -> ~62s. (CI has no built corpus, so
its bulk tests already hit the cached CSV fallback — the -v removal is
the CI-facing change; the parquet cache speeds local test.sh and the
deploy.sh --all gate.)

Coverage Stats

4729 of 6155 relevant lines covered (76.83%)

0.77 hits per line

Coverage Regressions

Lines	Coverage	∆	File
5	96.79	0.07%	bulk_proteomics.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	26974356414.1	04 Jun 2026 07:26PM UTC	29	76.83	GitHub Action Run

pirl-unc / hitlist / 26974356414
77%

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