openvax / pyensembl

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LAST BUILD ON BRANCH v2.6.8

branch: v2.6.8

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Build # 24855102926

Build Type

push

github

Committed by web-flow

Commit Message

Fix #297: tolerate parenthetical suffix in transcript_support_level (#332)

* Fix #297: parse transcript_support_level with parenthetical suffix

Recent Ensembl releases may emit values like
`transcript_support_level "1 (assigned to previous version 5)"`, causing
`int(tsl)` in `Genome.transcript_by_id` to crash once gtfparse no longer
strips internal whitespace from attribute values. Extract the leading
token and coerce it to an int when numeric, otherwise None.

* Address review: simplify TSL split and bump to 2.6.8

Call str.split() once into `tokens` instead of twice in the ternary, and
bump the version for release.

Coverage Stats

10 of 10 new or added lines in 2 files covered. (100.0%)

1348 of 1614 relevant lines covered (83.52%)

3.34 hits per line