openvax / pyensembl

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Build # 24727082325

Build Type

push

github

Committed by web-flow

Commit Message

Fix #286: protein_ids_at_locus now queries CDS feature (#329)

protein_ids_at_locus was calling the database with feature="transcript",
but protein_id is only populated on CDS rows. The previous behavior
returned a list of empty strings (one per overlapping transcript).

Every other protein_id query in the codebase (gene_id_of_protein_id,
transcript_id_of_protein_id, protein_ids()) already uses feature="CDS".

Adds a regression test at the HLA-A CDS locus.

Coverage Stats

1 of 1 new or added line in 1 file covered. (100.0%)

1319 of 1588 relevant lines covered (83.06%)

3.32 hits per line