openvax / pyensembl

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Add support for downloading plant species with pyEnsembl (#305)

This commit introduces the ability to download plant species data using pyEnsembl. We've added the 'is_plant' parameter to the Species class, and registered two new species: Arabidopsis Thaliana and Oryza Sativa (Rice).

We've also added the ENSEMBL_PLANTS_FTP_SERVER URL, and the PLANTS_GTF_SUBDIR_TEMPLATE and PLANTS_FASTA_SUBDIR_TEMPLATE for creating the download links. The code checks if the species is a plant to determine which templates to use.

35 of 39 new or added lines in 5 files covered. (89.74%)

1908 of 1987 relevant lines covered (96.02%)

2.82 hits per line