• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

openvax / pyensembl
85%
master: 83%

Build:
Build:
LAST BUILD BRANCH: v2.10.4
DEFAULT BRANCH: master
Repo Added 05 Jan 2018 08:34PM UTC
Files 22
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH fix-362-shell-root-logger
branch: fix-362-shell-root-logger
CHANGE BRANCH
x
Reset
  • fix-362-shell-root-logger
  • add-GRCm39
  • add-fly
  • add-python-314-ci
  • comparison-on-Locus
  • declare-python-classifiers
  • docs-drop-readme-line-anchors
  • docs-readme-source-links
  • docs-readme-text-fragment-anchors
  • ensembl-115-mouse-strains
  • feature-296-pyensembl-available
  • feature-pretty-pyensembl-available
  • feature/preserve-fasta-versions
  • fix-169-extended-protein-coding-flags
  • fix-176-coding-sequence-ranges-include-stop-codon
  • fix-177-biotype-kwarg
  • fix-186-locus-intersect
  • fix-190-merged-gene-intervals
  • fix-219-database-default-cache-dir
  • fix-242-version-and-versioned-id
  • fix-252-complete-tair
  • fix-260-locus-overlap-length
  • fix-280-distance-to-locus-ignore-strand
  • fix-283-nearest-gene-transcript
  • fix-286-protein-ids-at-locus
  • fix-298-ensembl-genomes-divisions
  • fix-335-part1-gencode-biotype-aliases
  • fix-335-part2-versioned-protein-fasta
  • fix-MT-normalization
  • fix-exon-id-missing
  • fix-hla-a-locus-tests
  • fix-pypi-autodeploy
  • fix-tsl-parentheses
  • fix/coveralls-parallel
  • fix/python314-argparse
  • fixing-travis
  • follow-up-334-soybean-xenopus-tighter-ranges
  • get-rid-of-ensembl-id-checking-too-many-exceptions
  • issue-287-ensembl-110
  • main
  • master
  • max-release-100
  • max-release-99
  • new-ensembl-versions-96-97
  • numpy2-support
  • only-create-dir-if-necessary
  • relax-serializable-ceiling
  • remove-assert-statements
  • remove-encrypted-values-for-external-contrib
  • remove-pandas-dependency
  • rename-version-fallback-helper
  • up-max-release
  • v2.10.0
  • v2.10.1
  • v2.10.2
  • v2.10.3
  • v2.10.4
  • v2.3.11
  • v2.3.12
  • v2.3.13
  • v2.3.9
  • v2.6.10
  • v2.6.11
  • v2.6.12
  • v2.6.13
  • v2.6.4
  • v2.6.5
  • v2.6.6
  • v2.6.7
  • v2.6.8
  • v2.6.9
  • v2.7.0
  • v2.8.0
  • v2.9.0
  • v2.9.1
  • v2.9.2
  • v2.9.3
  • v2.9.4
  • v2.9.5
  • v2.9.6
  • v2.9.7
  • v2.9.8
  • worktree-feature+update_setuptools

08 Jul 2026 06:11PM UTC coverage: 85.472% (-0.02%) from 85.494%
28965201756

Pull #363

github

iskandr
test: restore global logging state in configure_logging test

configure_logging() applies logging.conf, which mutates process-global
logging state (replaces the pyensembl logger's NullHandler with a live
console handler and reconfigures root). Snapshot and restore that state in
test_configure_logging_preserves_existing_loggers so it doesn't leak a
console handler into sibling tests running in the same worker.

Claude-Session: https://claude.ai/code/session_016pKPSmCAts4cacC3CQ9qsL
Pull Request #363: Fix #362: don't reconfigure root logger when importing pyensembl.shell

4 of 5 new or added lines in 2 files covered. (80.0%)

1665 of 1948 relevant lines covered (85.47%)

5.13 hits per line

Relevant lines Covered
Build:
Build:
1948 RELEVANT LINES 1665 COVERED LINES
5.13 HITS PER LINE
Source Files on fix-362-shell-root-logger
  • Tree
  • List 22
  • Changed 2
  • Source Changed 2
  • Coverage Changed 2
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
28965201756 fix-362-shell-root-logger test: restore global logging state in configure_logging test configure_logging() applies logging.conf, which mutates process-global logging state (replaces the pyensembl logger's NullHandler with a live console handler and reconfigures root). Sna... Pull #363 08 Jul 2026 06:16PM UTC iskandr github
85.47
28954107378 fix-362-shell-root-logger Fix #362: don't reconfigure root logger when importing pyensembl.shell pyensembl/shell.py called logging.config.fileConfig() at module top-level. fileConfig defaults to disable_existing_loggers=True, so importing the module (a) attached pyensembl... Pull #363 08 Jul 2026 03:24PM UTC iskandr github
85.47
See All Builds (287)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE TRIAL · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc