cokelaer / sequana
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fix: Remove incompatible include_groups parameter from groupby calls

include_groups parameter doesn't exist in pandas 3.0.6. Removing it allows
salmon.py to work with current pandas versions while maintaining compatibility.

2 of 2 new or added lines in 1 file covered. (100.0%)

5 existing lines in 2 files now uncovered.

20883 of 26853 relevant lines covered (77.77%)

2.33 hits per line

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26853 RELEVANT LINES 20883 COVERED LINES
2.33 HITS PER LINE
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Builds Branch Commit Type Ran Committer Via Coverage
38350496345 main fix: Remove incompatible include_groups parameter from groupby calls include_groups parameter doesn't exist in pandas 3.0.6. Removing it allows salmon.py to work with current pandas versions while maintaining compatibility. push cokelaer github
77.77
37278772873 main fix: Remove incompatible include_groups parameter from groupby calls include_groups parameter doesn't exist in pandas 3.0.6. Removing it allows salmon.py to work with current pandas versions while maintaining compatibility. push cokelaer github
77.77
37234868047 main update changelog push cokelaer github
77.57
34734229101 main Fix multiple import and initialization issues - bedtools.py: Initialize missing attributes (thresholds, feature_list, step, apply_threshold_after_merging) on empty FilteredGenomeCov object to prevent AttributeError - fastq.py: Fix buf_size underc... push cokelaer github
72.64
34368937367 main Fix multiple import and initialization issues - bedtools.py: Initialize missing attributes (thresholds, feature_list, step, apply_threshold_after_merging) on empty FilteredGenomeCov object to prevent AttributeError - fastq.py: Fix buf_size underc... push cokelaer github
72.63
33391323893 main Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> push web-flow github
69.1
33373264506 main Remove accidentally committed generated artifacts and migration doc - Remove HTML reports (bam.html, fastqc.html, summary.html, test.html, test_output.html, variant_calling.html) - Remove MIGRATION_REPORT_REFACTOR.md These were generated/tempora... push cokelaer github
69.1
33373094387 main Remove tmp file push cokelaer github
69.09
32593524003 main Fix PR 909 review findings: bowtie2 SE branch, error chaining, a11y, markup - multiqc/plots.py: gate SE branch on any unpaired_aligned_* column so SE files without a multi-mapping column no longer fall through to the PE branch; raise ValueErr... push cokelaer github
70.19
32533874202 main Merge branch 'fix-multiqc-plots-and-sidebar' push cokelaer github
70.19
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