cokelaer / sequana / 28574090561

Builds Branch Commit Type Ran Committer Via Coverage
28574090561 main Fix removed matplotlib.cm.get_cmap import for matplotlib>=3.9 Use matplotlib.colormaps[name] instead of the get_cmap function removed in matplotlib 3.9. Fixes ImportError in G4hunter.to_bed and trf.to_bed, and drops the dead get_cmap fallback in ... push cokelaer github
70.05
28572587160 main Add tests raising repeats and iem coverage - new test_g4hunter.py (G4Hunter + G4HunterReader): 13% -> 93% - new test_shustring.py (Repeats, skipped if shustring binary absent): 20% -> 86% - extend test_iem.py: BCLConvert missing-section errors, F... push cokelaer github
70.03
28572617670 main wording push cokelaer github
70.03
28547542375 main Note BCL Convert support in README version table push cokelaer github
69.9
28164915809 main Guard KEGGHelper.build_csv against failing KEGG organism list k.organismIds queries rest.kegg.jp/list/organism, which currently returns HTTP 400 and makes bioservices raise AttributeError instead of returning a list. Resolve it defensively and ba... push cokelaer github
69.84
26661145723 main increase metadata push cokelaer github
70.65
26374824552 main update kozak code push cokelaer github
70.69
24446911511 dev Fix regression push cokelaer github
71.53
24446833064 dev update metadata push cokelaer github
71.53
24087138115 dev Fix readme push cokelaer github pending completion
8325299538 dev Update taxonomy so as to retrieve DBs from zenodo (toydb and viruses_masking) push cokelaer github
74.19
8272025592 dev update metadata push cokelaer github
74.18
8108841843 dev Some fixes on rnadiff when no GFF is provided push cokelaer github
74.1
8101834251 dev New variants module to replace freebayes_vcf_filter freebayes_vcf_filter is kept for back compatiblity push cokelaer github
74.11
8101665351 dev New variants module to replace freebayes_vcf_filter freebayes_vcf_filter is kept for back compatiblity push cokelaer github
74.11