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cokelaer / sequana / 32593524003
70%
master: 67%

Build:
Build:
LAST BUILD BRANCH: main
DEFAULT BRANCH: master
Ran 22 Aug 2026 07:33PM UTC
Jobs 3
Files 208
Run time 1min
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22 Aug 2026 07:22PM UTC coverage: 70.189% (-0.001%) from 70.19%
32593524003

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cokelaer
Fix PR 909 review findings: bowtie2 SE branch, error chaining, a11y, markup

- multiqc/plots.py: gate SE branch on any unpaired_aligned_* column so
  SE files without a multi-mapping column no longer fall through to the
  PE branch; raise ValueError instead of silently dividing by zero when
  no SE alignment columns are present
- snpeff.py: chain raised ValueError with `from err` so the original
  BioServicesError is preserved for debugging
- report.css: respect prefers-reduced-motion by disabling smooth scroll
- standard.html: use <span> instead of <div> inside <h2> for valid
  markup, only rendered when title_links is present
- test_plots.py: check the 100% sum assertion across all samples, not
  just the first

2 of 5 new or added lines in 2 files covered. (40.0%)

16660 of 23736 relevant lines covered (70.19%)

2.11 hits per line

Uncovered Changes

Lines Coverage ∆ File
2
93.38
0.0% sequana/snpeff.py
1
96.23
-0.89% sequana/multiqc/plots.py
Jobs
ID Job ID Ran Files Coverage
1 32593524003.1 22 Aug 2026 07:33PM UTC 208
70.19
2 32593524003.2 22 Aug 2026 07:35PM UTC 208
70.18
3 32593524003.3 22 Aug 2026 07:36PM UTC 208
70.19
Source Files on build 32593524003
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  • List 208
  • Changed 1
  • Source Changed 0
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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