34734229101
78%
master: 67%

Ran 13 Sep 2026 03:06AM UTC

Jobs 3

Files 216

Run time 1min

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Committed 09 Sep 2026 03:14PM UTC coverage: 72.638% (+0.004%) from 72.634%

Build # 34734229101

Build Type

push

github

Committed by

cokelaer

Commit Message

Fix multiple import and initialization issues

- bedtools.py: Initialize missing attributes (thresholds, feature_list, step, apply_threshold_after_merging) on empty FilteredGenomeCov object to prevent AttributeError
- fastq.py: Fix buf_size undercounting for "+\n" separator (2 bytes, not 1) to enable proper buffer flushing
- multiqc/pairtools.py: Remove unused config import (F401)
- test/test_bedtools.py: Remove unused os, tempfile imports
- test/test_pdb.py: Remove unused os, tempfile, pytest, parse_pdb imports
- test/test_taxonomy.py: Handle bioservices ServiceUnavailable import compatibility across versions

Coverage Stats

18546 of 25532 relevant lines covered (72.64%)

2.18 hits per line

Coverage Regressions

Lines	Coverage	∆	File
3	63.38	-2.11%	sequana/modules_report/base_module.py
2	93.87	-0.2%	sequana/bedtools.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	34734229101.1	13 Sep 2026 03:06AM UTC	216	72.62
2	34734229101.2	13 Sep 2026 03:11AM UTC	216	72.63
3	34734229101.3	13 Sep 2026 03:11AM UTC	216	72.63

cokelaer / sequana / 34734229101
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master: 67%

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cokelaer / sequana / 34734229101 78% master: 67%

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cokelaer / sequana / 34734229101
78%
master: 67%

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