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broadinstitute / viral-ngs
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master: 23%

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Repo Added 01 Oct 2014 05:32PM UTC
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pending completion
1839

push

travis-ci

yesimon
Upgrade util.misc.run more like py3.5 run.

Change the run function to be more feature complete like py3.5's run
function. Relies on temporary files for stdout/stderr since
subprocess.PIPE is not allowed when we're trying to capture them.
Otherwise, use check_output like before which is more efficient if we
are redirecting stderr to stdout or not capturing.

Therefore allow kraken to separate stdout as datastream writing to file
and stderr in log messages.

82 of 82 new or added lines in 5 files covered. (100.0%)

4162 of 6333 relevant lines covered (65.72%)

1.31 hits per line

Relevant lines Covered
Build:
Build:
6333 RELEVANT LINES 4162 COVERED LINES
1.31 HITS PER LINE
Source Files on sy-subprocess-run
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1839 sy-subprocess-run Upgrade util.misc.run more like py3.5 run. Change the run function to be more feature complete like py3.5's run function. Relies on temporary files for stdout/stderr since subprocess.PIPE is not allowed when we're trying to capture them. Otherwis... push 13 Apr 2016 05:24AM UTC yesimon travis-ci pending completion  
1835 sy-subprocess-run Upgrade util.misc.run more like py3.5 run. Change the run function to be more feature complete like py3.5's run function. Relies on temporary files for stdout/stderr since subprocess.PIPE is not allowed when we're trying to capture them. Otherwis... push 12 Apr 2016 09:47PM UTC yesimon travis-ci pending completion  
1833 sy-subprocess-run Upgrade util.misc.run more like py3.5 run. Change the run function to be more feature complete like py3.5's run function. Relies on temporary files for stdout/stderr since subprocess.PIPE is not allowed when we're trying to capture them. Otherwis... push 12 Apr 2016 09:09PM UTC yesimon travis-ci pending completion  
1831 sy-subprocess-run Upgrade util.misc.run more like py3.5 run. Change the run function to be more feature complete like py3.5's run function. Relies on temporary files for stdout/stderr since subprocess.PIPE is not allowed when we're trying to capture them. Otherwis... push 12 Apr 2016 07:04PM UTC yesimon travis-ci pending completion  
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