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broadinstitute / viral-ngs
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LAST BUILD BRANCH: ct-krakenuniq-summary-kmer-filter
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Repo Added 01 Oct 2014 05:32PM UTC
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pending completion
440

push

travis-ci-com

yesimon
Revamp of metagenomics rules

Add support for krakenuniq, kaiju to replace kraken and diamond in
default pipelines.

Both rely on customized krakenuniq/kaiju packages for custom
functionality, like loading database
from pipe or printing out all taxa hits (kaiju).

Krona fixed to use hit counts as scores in report files directly,
instead of counting the
individual read classifications (which takes a long time).

293 of 2663 branches covered (11.0%)

288 of 288 new or added lines in 3 files covered. (100.0%)

1452 of 6168 relevant lines covered (23.54%)

0.92 hits per line

Relevant lines Covered
Build:
Build:
6168 RELEVANT LINES 1452 COVERED LINES
0.92 HITS PER LINE
Source Files on sy-krakenuniq
  • List 0
  • Changed 39
  • Source Changed 0
  • Coverage Changed 39
Coverage ∆ File Lines Relevant Covered Missed Hits/Line Branch Hits Branch Misses

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
440 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 01 Apr 2019 05:27PM UTC yesimon travis-ci-com pending completion  
438 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 29 Mar 2019 08:32PM UTC yesimon travis-ci-com pending completion  
439 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... Pull #927 29 Mar 2019 08:28PM UTC web-flow travis-ci-com pending completion  
436 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 29 Mar 2019 06:51PM UTC yesimon travis-ci-com pending completion  
437 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... Pull #927 29 Mar 2019 06:50PM UTC web-flow travis-ci-com pending completion  
434 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 29 Mar 2019 05:16AM UTC yesimon travis-ci-com pending completion  
435 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... Pull #927 29 Mar 2019 05:16AM UTC web-flow travis-ci-com pending completion  
433 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... Pull #927 29 Mar 2019 04:54AM UTC web-flow travis-ci-com pending completion  
432 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 29 Mar 2019 04:54AM UTC yesimon travis-ci-com pending completion  
430 sy-krakenuniq Revamp of metagenomics rules Add support for krakenuniq, kaiju to replace kraken and diamond in default pipelines. Both rely on customized krakenuniq/kaiju packages for custom functionality, like loading database from pipe or printing out all ta... push 28 Mar 2019 09:29PM UTC yesimon travis-ci-com pending completion  
See All Builds (6603)
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