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• ct-remove-ansible-config
• add-missing-threads-param-to-blastn
• add-sambamba
• add-yapf-style
• al-add-indices
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• al-illumina-indices_180325
• blastn_numthreads
• bump-baseimage
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• change_argparse_help_format
• cleanup-config_yaml
• conda-fix
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• conda-update-support
• ct-1.25.0_kraken_hotfix
• ct-add-alignment-stats
• ct-add-barcode-frequency-list
• ct-add-bwa-depletion
• ct-add-clumpify
• ct-add-conda-gatk
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• ct-add-coverage-plot
• ct-add-developer-docs
• ct-add-dockerfile
• ct-add-downsampling-tool
• ct-add-dp-pipeline-diagram
• ct-add-fastq-to-bam
• ct-add-flowcell-types
• ct-add-git-to-dockerignore
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• ct-add-matplotlib-to-docs-requirements
• ct-add-merge-to-vcf
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• ct-add-pseudoversion-sans-git
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• ct-add-travis-slack-integration
• ct-additional-demux-launcher-inputs
• ct-adjust-version-detection
• ct-ag100-exploration
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• ct-bugfix-accession-list-newer-snakemake
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• ct-bugfix-ncbi-annotation
• ct-bugfix-samplesheet-csv
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• ct-bugfix-taxon_filter-parser
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• ct-build-docker
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• ct-bump-cromwell-and-dx
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• ct-bump-pysam-samtools
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• ct-bump-viral-baseimage
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• ct-catch-snpEff-failure
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• ct-coverage-plot-dupe-options
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• ct-debug-bwa-deplete
• ct-debug-feature-table
• ct-debug-novaseq-demux
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• ct-demux-changes-for-nextseq
• ct-demux-debug
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• ct-demux-wdl-pass-runinfo
• ct-demux-zero-mismatches-allowed
• ct-demux_launcher-input-correction
• ct-depletion-revert-read-tags
• ct-diamond-fix
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• ct-downgrade-matplotlib
• ct-downsample-wdl-correction
• ct-downsample-wdl-debug
• ct-drop-py27
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• ct-dx-demux-novaseq-debug
• ct-easy-deploy
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• ct-easy-deploy-correction
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• ct-easy-deploy-ram-check
• ct-easy-deploy-update
• ct-empty-barcodes
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• ct-expoe-novoalign-param-strings
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• ct-expose-scaffolding-option-in-config
• ct-extend-align-and-plot-coverage
• ct-feature-clip-annotation-change
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• ct-featuretable-solo-qualifier-key
• ct-filename-escapes
• ct-filter-bam
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• ct-fix-bwamem_idxstats
• ct-fix-demux-checkdir
• ct-fix-pylintrc
• ct-fix-snakemake-params
• ct-fix-trimmomatic
• ct-flagstat-primary-alignments-only
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• ct-formatting
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• ct-guess-barcodes
• ct-gzip-to-pigz
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• ct-harden-samplesheet-input
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• ct-illumina-adapters
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• ct-max-threads-picard
• ct-merge-tarballs-wdl
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• ct-misc-fixes
• ct-mlin-demux-launcher
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• ct-mosaik-dynamic-linking
• ct-multialign
• ct-multialign-annotation-transfer-oob-fix
• ct-multialign-dev
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• ct-multialign-snpeff-db-build
• ct-note-pytest-tool-install-in-docs
• ct-omit-conda-build
• ct-option-to-pass-in-gatk
• ct-orient-impute-corrections
• ct-osx-travis-changes
• ct-output-version-in-wdls
• ct-parallel-lastal
• ct-parallelize-blastn-calls
• ct-pass-jvmmemory
• ct-patch-uger-jobscript
• ct-pin-attrs
• ct-pin-conda-bugfix
• ct-pin-snakemake
• ct-pin-tbl2asn
• ct-plot-bugfix
• ct-plot-with-sample-name-title
• ct-post-conda-cmd
• ct-preserve-ercc-in-spikein-report
• ct-py27-test-fixes
• ct-py35-test
• ct-pylint-improvements
• ct-re-condafy-tools
• ct-refactor-a-few-things
• ct-refactor-common-barcodes
• ct-refactor-easy-deploy-broad
• ct-refine-assembly-robust-to-empty-input
• ct-reformat-docker-docs
• ct-remote-db-bugfixing
• ct-remote-trigger-revision
• ct-remove-debug
• ct-remove-deploy-files
• ct-remove-docker-travis-wait
• ct-remove-kraken-custom-installers
• ct-remove-stale-symlink
• ct-remove-uger-proj
• ct-remove-yappi
• ct-rename-easy-deploy
• ct-rename-easy-deploy-script
• ct-rename-task-wdls
• ct-repair-malformed-zip
• ct-restore-unmatched-bam-wdl
• ct-retry-conda-install
• ct-retry-travis-conda-install
• ct-revert-bam-bugfix
• ct-revert-mosaik-avoid-buffer-overflow
• ct-revertsam-only-if-aligned
• ct-revise-install-instructions
• ct-revise-reports_only
• ct-revisit-run-and-print
• ct-rework-trinity-prep
• ct-run-pipe-from-conda
• ct-samplesheet-parse
• ct-samplesheet-parse-fix
• ct-samplesheet-remove-bom
• ct-samplesheet-txt-tabfile
• ct-samtofastq-rmdup-corrections
• ct-samtools-view-threads
• ct-scaffold-changes
• ct-scale-lastal-ram
• ct-separate-taxlevel-summary-task
• ct-single-end-bwa-deplete
• ct-skip-genbank-tests
• ct-snakemake-db-refactor
• ct-snakemake-notemp
• ct-snakemake-txt-skip-blank-lines
• ct-sort-wdl-spikein-report
• ct-spikein-aggregator-loglevel-patch
• ct-stub-out-doubly-mapped-failure-mode
• ct-subparser-help
• ct-subsample-bam-space
• ct-tabixfile-comment
• ct-tag-cache-du-fix
• ct-testing-metag-pipe-fixes
• ct-tmp-fix-for-uger
• ct-toggle-tests
• ct-travis-changes
• ct-travis-conda-debug2
• ct-travis-retry-conda-install
• ct-travis-ubuntu14.04
• ct-trigger-other-repo
• ct-trigger-script-change
• ct-trimmomatic-cutoff-values
• ct-trinity-in-same-conda-env
• ct-trinity-prep-clipping
• ct-try-signing
• ct-try-wdl
• ct-typo-fix
• ct-uger-bugfixes
• ct-uger-spec
• ct-unset-java-home
• ct-update-baseimage
• ct-update-blast
• ct-update-conda-packge-regex
• ct-update-deps
• ct-update-diamond
• ct-update-docs
• ct-update-docs-and-easy-deploy
• ct-update-docs-deps
• ct-update-docs-for-conda
• ct-update-docs-for-hosted-dbs
• ct-update-docs-gatk
• ct-update-docs-krakendb
• ct-update-docs-mention-contaminants
• ct-update-dxwdl
• ct-update-easy-deploy
• ct-update-easy-install
• ct-update-easy-install-docs
• ct-update-fastqc
• ct-update-gatk-source-url
• ct-update-java-on-travis
• ct-update-krona
• ct-update-licensed-tools
• ct-update-matplotlib
• ct-update-mosaik
• ct-update-novoalign
• ct-update-novoalign-3_07_00
• ct-update-novoalign-path
• ct-update-novoalign-version
• ct-update-perl
• ct-update-picard
• ct-update-picard-2.20.3
• ct-update-picard-2_21_1
• ct-update-picard-jul18
• ct-update-pipe-scripts
• ct-update-pysam
• ct-update-pytest
• ct-update-pyyaml
• ct-update-reports-rules
• ct-update-rundocker
• ct-update-snake-docs
• ct-update-snakemake
• ct-update-snakemake-docs
• ct-update-snakemake-resources
• ct-update-spikein-reference
• ct-update-travis
• ct-update-trimmomatic
• ct-update-viral-baseimage
• ct-update-wdl-ercc-default
• ct-use-active-conda-env
• ct-various-corrections
• ct-various-fixes
• ct-vcf_merge_naive_filter-correction
• ct-vphaser-wdl
• ct-wdl-aggregate-spikein-reports
• ct-wdl-debug
• ct-wdl-demux
• ct-wdl-metag-fix
• ct-wdl-skip-mark-dupes
• ct-wdl-task-update
• ct-wdl-type-fix
• ct_illumina_indices_typofix
• ct_md5_assert_fail_msg
• docs-typo-fix
• dp-89-isnv-merge
• dp-add-make
• dp-align
• dp-align-orient
• dp-align-to-ref
• dp-alt-contigs
• dp-annot
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• dpark-depletion-pipeline
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• easy-deploy-broad
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• enable-osx-builds
• escape-sample-names
• fix-novo-rgs
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• fix-trimmomatic-bug
• genbank-prep-multisegment-support
• hm-add-bwa-score-filter
• hm-add-covg-plot-axis-limits
• hm-add-kraken-rule
• hm-add-read-count-to-vcf
• hm-blacklist-sgi1
• hm-blacklist-uger-nodes
• hm-cleanup-krona-tmp-files
• hm-dont-require-gi-map
• hm-fix-bwa-aln
• hm-fix-depletion-threads
• hm-fix-interhost-rules
• hm-fix-json-serializability-bug
• hm-fix-merge-one-per-sample-inputs
• hm-fix-metagenomics-input
• hm-fix-nonoverlapping-seqs
• hm-fix-plot-covg-missing-bam
• hm-fix-reports
• hm-fix-reports-with-no-coverage
• hm-fix-sample-id-regex
• hm-fix-spikein-align
• hm-muv-downsampled-assembly
• hm-zikv
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• hml-80-complete
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• irwin-bmtaggerURL
• irwin-fix_test_taxon_filter
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• is-180806-update-spades-to-3.12.0
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• is-add-check-paths
• is-add-gap2seq
• is-add-gapfill-to-pipeline
• is-add-kmc
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• is-add-metaspades-and-fix-mummer-scaffolding
• is-add-protein-taxon-filt
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• is-fix-assembly-wdl
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• is-fix-ci-ostype
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• is-fix-conftest
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• is-fix-illumina-missing-files-handling
• is-fix-kraken
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• is-fix-wdl-assemble-trinity-spades
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• is-metadata
• is-metadata-recording
• is-metadata-recording-1
• is-modularize-assembly
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• is-new-fix-cromwell-local-tests
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• is-update-spades-to-3.13.0-new
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• origin/hm-fix-metagenomics-input
• relocate-conda-cache
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• revert-936-sy-remove-merge-compressed
• run-pipe-config-file-revert
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• single-end-improvements
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• staging
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• sy-indicate-jobid
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• sy-kraken-rule-tweak
• sy-kraken-single-default
• sy-kraken-tests-refactor
• sy-kraken-viral-mix-test
• sy-kraken2-deplete
• sy-krakenuniq
• sy-krakenuniq-dev
• sy-krona-db
• sy-krona-integration
• sy-krona-kmers
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• sy-merge-exception
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• sy-metabwa-update
• sy-metagenomics-fixes
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• sy-metagenomics-work
• sy-more-tool-checks
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• sy-nodupes
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• sy-pip-cache
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• sy-py3
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• sy-taxon-filter-updates
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• sy-trinity-conda-env
• sy-trinity-ulimit
• sy-typos
• sy-unitify-test-tools-kraken
• sy-update-picard
• sy-update-pytest
• sy-update-tox
• sy-use-uger
• sy-whitespace-cleanup
• sy-yapf
• sy-zst
• synced/is-1808251951-test-git-annex
• synced/is-1808252024-add-benchmarks
• tbl2asn-version-fix
• test_deplete_human
• tomkinsc-patch-1
• travis-py27
• update-docs
• update-prinseq
• v0.2.0
• v0.2.2
• v0.2.3
• v0.2.4
• v0.3.0
• v0.3.1
• v0.3.2
• v0.3.3
• v0.3.4
• v0.4.0
• v0.5.0
• v0.5.1
• v0.5.2
• v0.5.3
• v0.5.4
• v0.5.5
• v0.9.0
• v0.9.1
• v1.0.0
• v1.1.0
• v1.1.1
• v1.1.2
• v1.1.3
• v1.10.0
• v1.10.1
• v1.11.0
• v1.12.0
• v1.12.1
• v1.12.2
• v1.13.2
• v1.13.3
• v1.13.4
• v1.14.0
• v1.15.0
• v1.15.1
• v1.15.2
• v1.15.3
• v1.15.4
• v1.16.0
• v1.17.0
• v1.17.1
• v1.17.2
• v1.17.3
• v1.18.0
• v1.18.1
• v1.18.2
• v1.19.0
• v1.19.1
• v1.19.2
• v1.19.3
• v1.2.0
• v1.2.1
• v1.2.2
• v1.2.3
• v1.2.4
• v1.20.0
• v1.20.1
• v1.21.0
• v1.21.1
• v1.21.2
• v1.22.0
• v1.22.1
• v1.24.0
• v1.25.0
• v1.3.0
• v1.3.1
• v1.3.2
• v1.3.3
• v1.3.4
• v1.3.5
• v1.4.1
• v1.4.2
• v1.4.3
• v1.4.4
• v1.4.5
• v1.5.0
• v1.5.1
• v1.5.3
• v1.5.4
• v1.5.5
• v1.6.0
• v1.6.1
• v1.7.0
• v1.7.1
• v1.8.0
• v1.9.0
• v1.9.1
• v1.9.2
• variable-ec2-region-for-easy-deploy

Build # 3472

Build Type

push

travis-ci

Committed by tomkinsc

Commit Message

Remove easy-deploy-virtualized

Its new home will be viral-ngs-deploy

Run Details

5270 of 7566 relevant lines covered (69.65%)

2.08 hits per line