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broadinstitute / catch
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Repo Added 23 Jan 2018 01:57PM UTC
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  • require-output
  • auto-choose-clustering-method
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pending completion
264

Pull #20

travis-ci-com

web-flow
Require -o argument in design.py

Previously, the `-o/--output-probes` argument was optional. This
could be desired if the goal was only to determine the number
of probes: even if the probe set is designed in order to compute
this number, one could simply leave out `-o` to ignore the probe
set. But this might be confusing, since a user could easily
run `design.py` to design a probe set, and find out after it runs
that the probe set was not output. It could also be wasteful
because `design.py` is sometimes computationally expensive to run
and a user could mistakenly leave out `-o`.

To avoid these issues, this commit changes the output argument
to be required.

This also updates the README to account for `-o` now being
required.
Pull Request #20: Require -o argument in design.py

1381 of 1563 branches covered (88.36%)

4710 of 4958 relevant lines covered (95.0%)

2.85 hits per line

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Builds Branch Commit Type Ran Committer Via Coverage
264 require-output Require -o argument in design.py Previously, the `-o/--output-probes` argument was optional. This could be desired if the goal was only to determine the number of probes: even if the probe set is designed in order to compute this number, one coul... Pull #20 05 Jan 2019 12:01AM UTC web-flow travis-ci-com pending completion  
263 require-output Require -o argument in design.py Previously, the `-o/--output-probes` argument was optional. This could be desired if the goal was only to determine the number of probes: even if the probe set is designed in order to compute this number, one coul... push 04 Jan 2019 11:59PM UTC haydenm travis-ci-com pending completion  
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