broadinstitute / catch

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Build # 342

Build Type

push

travis-ci-com

Committed by haydenm

Commit Message

Improve handling of the case when there are no candidate probes

There may be some valid cases where there are no candidate probes. For
example, if genomes are clustered and --small-seq-skip is set, one
cluster may contain short genomes that are all skipped -- and thus and
the cluster has no genomes and therefore no candidate probes. This will
cause an error because kmer_probe_map would be empty. This commit allows
clusters/groupings of genomes to have no candidate probes, and for CATCH
to proceed in that case.

Run Details

1560 of 1801 branches covered (86.62%)

5 of 5 new or added lines in 2 files covered. (100.0%)

5438 of 5764 relevant lines covered (94.34%)

2.83 hits per line