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broadinstitute / catch
95%
master: 94%

Build:
Build:
LAST BUILD BRANCH: v1.5.1
DEFAULT BRANCH: master
Repo Added 23 Jan 2018 01:57PM UTC
Files 67
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  • lsh
  • auto-choose-clustering-method
  • cleanup
  • cluster-genomes
  • code-of-conduct
  • count-probe-covg
  • custom-covg-fn
  • download-seqs
  • expose-kmer-probe-map-k
  • fail-count-assertion-message
  • filter-polya
  • fix-edge-case-bugs
  • fix-macos
  • hm-better-hash
  • hm-citation-file
  • hm-fix-initial-guess
  • hm-fix-long-fragment-length
  • hm-fix-no-candidate-probes
  • hm-update-python-versions
  • master
  • readme-virtualenv
  • reduce-open-file-descriptors
  • reduce-valueerrors
  • require-output
  • simplify-large-input
  • simplify-version
  • skip-small-seqs
  • speed-sc-setup
  • update-dependency-versions
  • v1.0.0
  • v1.1.0
  • v1.2.0
  • v1.3.0
  • v1.3.1
  • v1.4.0
  • v1.4.1
  • v1.5.0
  • v1.5.1

pending completion
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travis-ci

haydenm
Mention LSH options in README

1510 of 1693 branches covered (89.19%)

4621 of 4869 relevant lines covered (94.91%)

0.95 hits per line

Relevant lines Covered
Build:
Build:
4869 RELEVANT LINES 4621 COVERED LINES
0.95 HITS PER LINE
Source Files on lsh
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line Branch Hits Branch Misses

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
13 lsh Mention LSH options in README push 17 Apr 2018 04:47PM UTC haydenm travis-ci pending completion  
12 lsh Add filter for near-duplicate probes using MinHash This filter is like the one using LSH based on Hamming distance, except this uses a family that constructs MinHash signatures. This commit adds an option to design.py for using this filter. The m... push 10 Apr 2018 09:22PM UTC haydenm travis-ci pending completion  
10 lsh Add filter for near-duplicate probes based on Hamming distance Like the duplicate filter, this is not necessary, but running it before the set cover filter can significantly lower runtime and reduce memory usage by decreasing the input size (numb... push 09 Apr 2018 08:51PM UTC haydenm travis-ci pending completion  
9 lsh Add filter for near-duplicate probes based on Hamming distance Like the duplicate filter, this is not necessary, but running it before the set cover filter can significantly lower runtime and reduce memory usage by decreasing the input size (numb... push 09 Apr 2018 05:59PM UTC haydenm travis-ci pending completion  
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  • Repo on GitHub
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