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broadinstitute / catch
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Repo Added 23 Jan 2018 01:57PM UTC
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  • filter-polya
  • auto-choose-clustering-method
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  • count-probe-covg
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275

Pull #22

travis-ci-com

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Add --filter-polya argument to design.py

When this argument is set, design.py uses polya_filter to filter
out candidate probes that contain long stretches of A bases (or
T bases). The definition of such a stretch is specified as
arguments with --filter-polya.
Pull Request #22: Add option to filter probes with poly(A) sequence

1402 of 1585 branches covered (88.45%)

85 of 85 new or added lines in 2 files covered. (100.0%)

4802 of 5051 relevant lines covered (95.07%)

2.85 hits per line

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5051 RELEVANT LINES 4802 COVERED LINES
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275 filter-polya Add --filter-polya argument to design.py When this argument is set, design.py uses polya_filter to filter out candidate probes that contain long stretches of A bases (or T bases). The definition of such a stretch is specified as arguments with --... Pull #22 09 Jan 2019 07:15PM UTC web-flow travis-ci-com pending completion  
274 filter-polya Add --filter-polya argument to design.py When this argument is set, design.py uses polya_filter to filter out candidate probes that contain long stretches of A bases (or T bases). The definition of such a stretch is specified as arguments with --... push 09 Jan 2019 07:06PM UTC haydenm travis-ci-com pending completion  
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