broadinstitute / catch

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LAST BUILD ON BRANCH expose-kmer-probe-map-k

branch: expose-kmer-probe-map-k

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Build # 28

Build Type

push

travis-ci

Committed by haydenm

Commit Message

Expose option to set kmer_probe_map_k parameter

This parameter specifies the k-mer length used when constructing a map of
k-mers to probes.  (In particular, CATCH tries to determine a suitable k-mer
length using this value as a lower bound; if it cannot, it takes a randomized
approach and uses this value as the k-mer length.)

This is useful when designing short probes (e.g., meant to be primers), in
which case the default k-mer length may be too short relative to the probe to
find mappings of the probes to the target sequence.

Run Details

1535 of 1721 branches covered (89.19%)

4709 of 4968 relevant lines covered (94.79%)

0.95 hits per line