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biocore / kl-metapool
93%

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DEFAULT BRANCH: master
Repo Added 07 May 2025 09:12PM UTC
Token G1F3gXkkvja33CXhJawZFbQDBelLuWeVG regen
Build 169 Last
Files 42
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  • 2025.05.1+beta
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16 Jan 2026 06:46PM UTC coverage: 92.633%. Remained the same
21077173067

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github

web-flow
A handful of small patches (#360)

* remove extra cell, comment out a straggling input block in metat notebook

* change contains_replicates test from 'True' to True in metaG notebook per wet lab error report

* add `revcomp_samplesheet_i5_index: false` to MiSeqi100 and MiSeqi100Plus sequencer records per wet lab error report that they are missing

* rename reused variable exposed by input comment-out, remove unnecessary, maybe bug-inducing resetting of 'vol_extracted_elution_ul' column

* fix `all()` instead of `any()` code review catch in metaT `contains_replicates` setting (currently commented out)

6614 of 7140 relevant lines covered (92.63%)

0.93 hits per line

Relevant lines Covered
Build:
Build:
7140 RELEVANT LINES 6614 COVERED LINES
0.93 HITS PER LINE
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Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
21077173067 master A handful of small patches (#360) * remove extra cell, comment out a straggling input block in metat notebook * change contains_replicates test from 'True' to True in metaG notebook per wet lab error report * add `revcomp_samplesheet_i5_index: ... push 16 Jan 2026 06:56PM UTC web-flow github
92.63
21076854117 patches_20260115 Merge feb36b718 into 065b49f90 Pull #360 16 Jan 2026 06:44PM UTC web-flow github
92.76
21051594643 patches_20260115 Merge 80015f066 into 065b49f90 Pull #360 16 Jan 2026 12:56AM UTC web-flow github
92.76
20941370204 master Notebook unittests for absolute quant cases (#359) * add tellseq notebook absquant tests, update absquant test files to reflect change in add_controls output and decimal formatting * limit decimal places in output formatting for absquant df file... push 13 Jan 2026 01:45AM UTC web-flow github
92.63
20938700527 notebook_unittests_absquant Merge af928f436 into 5c4fc69a7 Pull #359 12 Jan 2026 11:40PM UTC web-flow github
92.76
20938379316 master Notebook unittests for Tellseq B and Tellseq C notebooks (#358) * modify tellseq notebook B to support added unit tests, update test files to reflect change in add_controls output * explicitly format column that is causing floating point differe... push 12 Jan 2026 11:24PM UTC web-flow github
92.62
20936646009 notebook_unittests_tellseqB_and_tellseqC Merge f62a353f6 into 0a793cc3f Pull #358 12 Jan 2026 10:16PM UTC web-flow github
92.74
20929950507 master Notebook unittests for TellseqA and TellseqD notebooks (#357) * modify tellseq notebook D and associated unit tests to use same approach as others, add support for checking autoconstructed output paths * modify tellseq notebook A to support adde... push 12 Jan 2026 06:16PM UTC web-flow github
92.62
20801167524 notebook_unittests_tellseqA_tellseqD Merge 82482abbf into 37f9bf1ba Pull #357 08 Jan 2026 12:39AM UTC web-flow github
92.75
20800437422 master Notebook unittests for metaT notebook (#355) * modify metatranscriptomics notebook to support added unit tests, update test files to reflect change in add_controls output and rounding to 3 decimals of total_rna_concentration_ng_ul value * tempor... push 08 Jan 2026 12:02AM UTC web-flow github
92.63
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