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biocore / kl-metapool
92%

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DEFAULT BRANCH: master
Repo Added 07 May 2025 09:12PM UTC
Token G1F3gXkkvja33CXhJawZFbQDBelLuWeVG regen
Build 113 Last
Files 36
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LAST BUILD ON BRANCH master
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  • master
  • 2025.05.1+beta
  • 2025.05.2
  • 2025.07.1
  • 2025.07.2
  • 2025.07.2+beta
  • abs_quant_metag_11_load_support
  • amplicon_fix
  • beta
  • centralize_sequencers
  • config_location
  • contains_replicates_hotfix
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  • minor-changes-062025
  • notebook_patch
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  • pacbio
  • pacbio_0829
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  • pacbio_0910_2
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  • setup
  • validate_sample_sheets_on_load

12 Sep 2025 05:58PM UTC coverage: 92.417%. Remained the same
17682217031

push

github

web-flow
Contains replicates hotfix (#336)

* fix contains_replicates not set correctly

* update comments

---------

Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com>

6545 of 7082 relevant lines covered (92.42%)

0.92 hits per line

Relevant lines Covered
Build:
Build:
7082 RELEVANT LINES 6545 COVERED LINES
0.92 HITS PER LINE
Source Files on master
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  • List 36
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
17682217031 master Contains replicates hotfix (#336) * fix contains_replicates not set correctly * update comments --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 12 Sep 2025 06:04PM UTC web-flow github
92.42
17626638054 master fix double lane columns, empty barcode column for pacbio prep files from seqpro (#334) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 10 Sep 2025 09:03PM UTC web-flow github
92.42
17620911532 master added fixes from Antonio for pacbio spp debugging (#333) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 10 Sep 2025 04:59PM UTC web-flow github
92.42
17597314350 master move barcode id from sample_id to separate barcode_id column (#332) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 09 Sep 2025 10:31PM UTC web-flow github
92.42
17569392779 master Add support for parsing revio run ids and getting prep file platform and sequencing method from sequencer type (#331) * WIP: get platform and sequencing_meth from sequencer type config yaml * add ability to parse revio run ids, get platform and ... push 09 Sep 2025 02:02AM UTC web-flow github
92.42
17445908463 master Change well column name in PacBio sheets from 'well_id_384' to 'Sample_Well' (#330) * Change well column name in PacBio sheets from 'well_id_384' to 'Sample_Well' * fix lint issues --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBi... push 03 Sep 2025 09:03PM UTC web-flow github
92.38
17340094276 master put back metatv0-as-metag (#329) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 30 Aug 2025 05:53AM UTC web-flow github
92.38
17339563956 master change sheet type for metatv0 to standard_metat (#328) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push 30 Aug 2025 04:56AM UTC web-flow github
92.38
17338736052 master Pac bio sample sheets (#327) * add initial pacbio sample sheet support * add absquant pacbio sample sheet * fix lints * address code review comments --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.... push 30 Aug 2025 03:26AM UTC web-flow github
92.38
17335339726 master Back out some of setup changes (#326) * Add back setup and sync with environment * add pip install back to ci * comment out seqtk in setup * fix lint * fix lint * fix lint --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBirming... push 29 Aug 2025 10:21PM UTC web-flow github
92.24
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