biocore / kl-metapool
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coverage: 92.585% (+0.02%) from 92.561%
19117964099

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Remove strict option from make_sample_sheet (#345)

* remove strict option for make sample sheet

* Note need to remove illumina file name dependence

* extended comments

* modify comment

* per discussion with @antgonza, fully remove strict param from make_sample_sheet

17 of 17 new or added lines in 2 files covered. (100.0%)

6380 of 6891 relevant lines covered (92.58%)

0.93 hits per line

Relevant lines Covered
6891 RELEVANT LINES 6380 COVERED LINES
0.93 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
19117964099 master Remove strict option from make_sample_sheet (#345) * remove strict option for make sample sheet * Note need to remove illumina file name dependence * extended comments * modify comment * per discussion with @antgonza, fully remove strict para... push web-flow github
92.58
19109174563 master Change sample id col name in internal notebook dataframe (NOT sample sheet) (#343) * change input sample id column name * remove incomplete comment push web-flow github
92.56
19086575293 master Update to py3 10 (#342) * migrate to pytest from nosetest * update to python 3.10 bc Jupyter no longer supports end-of-life 3.9 * lint/formatting fixes * per discussion with @antgonza, removed IGMManifest functionality push web-flow github
92.56
18386258335 master Machine prefix addition (#337) * Modify machine prefix for i100, add for i100 Plus * Unrelated small fix for load with strict=True push web-flow github
92.42
17682217031 master Contains replicates hotfix (#336) * fix contains_replicates not set correctly * update comments --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push web-flow github
92.42
17626638054 master fix double lane columns, empty barcode column for pacbio prep files from seqpro (#334) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push web-flow github
92.42
17620911532 master added fixes from Antonio for pacbio spp debugging (#333) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push web-flow github
92.42
17597314350 master move barcode id from sample_id to separate barcode_id column (#332) Co-authored-by: Amanda Birmingham <10677935+AmandaBirmingham@users.noreply.github.com> push web-flow github
92.42
17569392779 master Add support for parsing revio run ids and getting prep file platform and sequencing method from sequencer type (#331) * WIP: get platform and sequencing_meth from sequencer type config yaml * add ability to parse revio run ids, get platform and ... push web-flow github
92.42
17445908463 master Change well column name in PacBio sheets from 'well_id_384' to 'Sample_Well' (#330) * Change well column name in PacBio sheets from 'well_id_384' to 'Sample_Well' * fix lint issues --------- Co-authored-by: Amanda Birmingham <10677935+AmandaBi... push web-flow github
92.38
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