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• tmi/utils
• master
• update_docker_script
• enrich_random_patch
• readme_badges
• jitter_signal
• visualization_example
• fix_double_testing
• travis_fix
• requirements_test
• extraction_bug
• sphinx_setup
• line_length
• stitch_test
• update-flag
• normal_transform
• integrated_plotting
• integrated_plotting_functions
• integrated_plotting_function
• test_utils
• dist_mat_index
• contributing_guidelines
• line-length-fix
• deepcell-task
• context_spatial
• sphinx_style
• test-utils
• regionprops_extension
• nbsphinx_delete
• boxplot_func
• dim_red_clean
• doc_org
• doc_org_redux
• pypi_setup
• modify_nuc_labels
• binning_labels_part_2
• initial_deploy
• v0.2.4
• pypi_debug
• v0.2.5
• pypi_name
• v0.2.6
• virt_env_doc
• virt_env_doc_redux
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• data_utils_clean
• spatial_utils_clean
• syn_data_clean
• seg_clean
• global-settings
• nuclei_split_threshold
• k_means
• point_remove
• test_ignore
• req_ranges
• verify_refactor
• close_num_fix
• combined-notebook
• k_means_mat
• bump_version
• marker_verify
• load_utils_fix
• channel_unsort
• ngreenwald-patch-1
• tiff_ext
• v0.2.7
• neighbor_notebook
• pypi_bugfix
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• data_models_readme
• rtd_reorg
• check_cov
• docker_port
• zip_compression
• faq
• mibitiff_cell_mat
• chan_stand
• celltable_im_dtype_fix
• setup_reqs
• update_contributing_doc
• plot_clustering_result
• cluster_fix
• plot_utils_clean
• v0.2.8
• rescale_deepcell_input
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• substr_fix
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• som_cluster_test
• som_pre
• som_pre_test
• extraction-options
• plot_overlay_fix
• docker_memory
• xarray_exp
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• cluster_boost
• auto-upload-patch
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• r_som
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• fix-setup-typo
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• som_norm
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• add-citation
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• regionprops_sanitization
• ngreenwald-patch-1-1
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• v0.2.9
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• rebuild_docker
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• google-drive-integration
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• tiling_add
• flowsom_notes
• spatial_LDA
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• metacluster_gui
• add_nuc_count
• rescale_doc
• docker_update
• improve_jupyter_launch
• processing_branch
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• rand_mod
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• cryptography_fix
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• spatial-analysis-nb-update
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• docker-command-fix
• jupyter_lab
• spatial-analysis-fov-batching
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• cluster_viz
• context-dependent-randomization
• close-num-rand-speedup
• alt_dtype_handling
• lda_metrics
• google-drive-hotfix
• spatial_LDA_viz
• LDA_training_and_inference
• deepcell_path_patch
• template_developer_flag
• qc_metrics
• start-docker-upgrade
• pin-docutils
• design_doc
• ipympl_fix
• rosetta_matrix
• download_mibi
• tile_viz
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• viz_patch
• close-num-rand-asymmetry
• docker_windows
• different_image_sizes
• dependabot/pip/docs/ipython-7.16.3
• remap
• travis_mult
• docker_deploy
• v0.2.10
• v0.2.11
• docker_windows_doc_fix_sri
• substr-matching
• remove_mibi_dir
• verify_err_msg
• ignore_hidden_files
• no-contrast-check
• pixel_path_fix
• remove_googledrivepath_dead_code
• docker_open_scripts_dir
• som_updates
• docker_build_instructions
• verify_warnings
• iter_viz
• overlay_cmap
• consensus_clear
• load_tree_wrong_chan_name
• pixel_mask_boost
• som_memory
• readd_docker_update
• pixel_overlay_patch
• pixel_channel_mem
• readme_build_fix
• python_3.7
• external_drive_docker_docs
• metacluster_width
• cell_label_add
• fiber-segmentation
• flex_som_map
• fov_name_parsing_fix
• fov_masks_separate_dir
• pix_preprocessing
• custom_smooth
• contributing_update
• bug-583-verify-in-np-array
• condence_cluster_data
• m1_ark_setup
• pixel_som_verify_fix
• feature/release_drafter
• parallel_som
• default_zip
• iterable_dtypes_fix
• deepcell_json_decode
• empty_seg_mask
• update_blur_description
• 0.3.0
• add_back_px_chan_norm
• remove_manual_clustering_nb
• v0.3.0
• python_3.7_version_download_fix
• som_norm_path_fix
• 0.3.1
• v0.3.1
• restart_som
• download_url_remove_v
• som_dtype_pass
• adjusting_PKG_FOLDER
• v0.3.2
• som_compress
• ark-3.6
• python-3.6
• ark-3.7-docker
• python-3.7
• load_utils_float_conversion_warning
• delete_feather
• seperate_folders
• remove_file_extension_fix
• travis_ci_docker_tags
• remove_rplots
• meta_zscore_slider
• move_meta_rename
• pixel_mask_batches
• mantis_dir
• adjust_pixel_overlays
• context-tests
• enrichment-distance-hack
• nuc_filter
• python-3.8+AppleSilicon_support
• verify_norm_chans
• docker-test
• batching-progress-bar
• notebook_reorg
• post_clustering
• ark_pipeline
• update_seg_save
• windows_docker_restart
• split_som_modules
• v0.4.0
• start_docker_script_fix
• v0.4.1
• spatial_enrichment_test
• remove_templates
• mantis_assign_cells
• main
• github-actions-from-template
• docker_tag_sec
• next_release_v0.4.1
• dist-lim-correction
• progress_bars
• speed_tests
• readme_discussion
• docker_flowsom_install_fix
• example_dataset
• workshop_vods
• cleanup_imports
• docker_badge
• wsl_doc
• tiled_images
• core_fix
• deepcell_flex_size
• multiarch_docker
• kmeans_neighborhood_nb_update
• docker-local-changes
• local-updating
• nuclear_counts_false
• data_prefix
• next_release_v0.4.2
• pixel_mask_index
• unbatch_cell_table
• unbatch_mask_gen
• spatial_enrichment_loading
• templates_rename
• cluster_mask_speed
• example_dataset/nb2
• condense_label_save
• v0.4.2
• settings_name_update
• docker_start_add
• arrow_patch
• unbatch_spatial
• rtd_path
• pypi_req_fix
• next_release_v0.4.3
• neighborhood_progress
• v0.4.3
• example_dataset/nb3
• optimize_df_merging
• example_dataset/nb4
• example_dataset/merged_dataset
• remove_MIBItiff
• remove_mibitiff_in_notebooks
• patch_tests
• add_single_proc
• notebook_update_test_bash_cmd
• example_dataset/caching
• kmeans_nh_no_excluded_channels_fix
• notebook_tests
• example_dataset/local_caching
• validate_paths_usage
• optimization/compressed_csvs
• adjust_load_tiled_imgs
• tiff_standard
• next_release_v0.4.4
• refactor_dist_mat
• v0.4.4
• ci/wheel_building
• docs/cell_table_info
• pixie_authorship
• feature_0_1
• patch_mask_gen
• patch_kmeans_min
• ome_tiff
• subset_channel_avg
• neigh_index
• example_dataset/overwrite_existing_docs
• mantis/generalize_seg_mask_suffix
• example_dataset/spatial_analysis
• kmeans_seed
• create_mantis_proj_dup
• git_install_instructions
• py_consensus
• input_validation
• mixing_score
• mantis/img_suffix
• seg_dir_cluster
• pixie_clean
• pyflowsom_add
• readme/pipeline_flowchart/pixie
• mantis_seg_suffix
• colorbar_scale
• example_dataset/cropped_fov0
• v0.5.0
• next_release_v0.5.0
• load_utils/load_tif
• pixie/filter_with_nuclear_mask
• preprocess_pixie_cell
• zero_col_cell
• 883-unable-to-create-overlay-image-using-mesmer-output-tiff-and-input-tiff-images
• next_release_v0.5.1
• v0.5.1
• start_cell_cluster
• remove_deterministic
• cell_99
• cell_table_slow
• z_slider_fix
• retrain_pixel_som
• propagate_fovs
• gh-readonly-queue/main/pr-894-a4b2841ce9600938f2f8e6aee04e925008c10858
• dependabot/pip/docs/ipython-8.10.0
• gh-readonly-queue/main/pr-908-1f3859f53982d9c1dece38f92af570d99b8b4466
• 857-refactor-mask-generation
• cbar_minor_ticks
• overwrite_option
• gh-readonly-queue/main/pr-935-39089035bea2d2167380f0b22881d8f9b4a3f515
• gh-readonly-queue/main/pr-942-7b37816d667c39e4fbad124a22fe273a69728520
• gh-readonly-queue/main/pr-951-ad4e42fd7bf84a971b9719618b073d887746f6c8
• gh-readonly-queue/main/pr-953-8293e1fbf57ea22cb59a09fa46d61a461f57d5ed
• gh-readonly-queue/main/pr-955-f9a412b454ec0e25e336cd99607312b89776ece9
• gh-readonly-queue/main/pr-946-f6e0d2a56b0231502fc61cf0a65ce2d7a2d6b644
• gh-readonly-queue/main/pr-959-8e5366783c2ae5b26ff9cad32f2a198f841815f5
• gh-readonly-queue/main/pr-960-68a3d954090f6ec36d066bca4928e32772b390db
• gh-readonly-queue/main/pr-939-8d28c2cdcc76eded9a9da4a81b1e5ee2b5424ece
• gh-readonly-queue/main/pr-966-ac64b0e8b6e3df54de30e5a9fc20f5d132b51fed
• gh-readonly-queue/main/pr-978-675a7e1f2ee3c8faa16a69800ee2271d355474a0
• gh-readonly-queue/main/pr-983-061a128886947bf3b0c22f30623fb6e0fe5e647e
• gh-readonly-queue/main/pr-981-dc9854979077335b04af85a0030f301bb2d7365b
• gh-readonly-queue/main/pr-973-79177931bdfaa98cae63b0a33c6aee289f93fc9a
• fix_np_float
• mask_index_fix
• gh-readonly-queue/main/pr-994-aa4f11452cf1b2dbdb93fb0d1378aabc892cedd3
• gh-readonly-queue/main/pr-998-cb8084748a94e9004e9685075cdf8e7d783814d3
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• gh-readonly-queue/main/pr-1007-d7bbe1501d4e8828ca797e7ef7cf7afa2832811b
• gh-readonly-queue/main/pr-993-c0c31edac976dbb6ecda5d101de1cbd3a880cc78
• meta_dup
• gh-readonly-queue/main/pr-999-e663b04156d6b5e299d33a48dfc3314df6601d5d
• gh-readonly-queue/main/pr-991-2af302d202e64c63d0a19bc0fba40527302adca5
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• docker_doc_deprecate

Build # 7535

Build Type

Pull #825

travis-ci-com

Committed by web-flow

Commit Message

Merge ea2ee89e0 into e5c5ad14e

Pull Request Pull Request #825: Adding TMI

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