angelolab / ark-analysis

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• 0.3.0
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• 857-refactor-mask-generation
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• add-citation
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• adjust_load_tiled_imgs
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• gh-readonly-queue/main/pr-978-675a7e1f2ee3c8faa16a69800ee2271d355474a0
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• gh-readonly-queue/main/pr-999-e663b04156d6b5e299d33a48dfc3314df6601d5d
• git_install_instructions
• github-actions-from-template
• global-settings
• google-drive-documentation
• google-drive-hotfix
• google-drive-integration
• ignore_hidden_files
• improve_jupyter_launch
• initial_deploy
• input_validation
• integrated_plotting
• integrated_plotting_function
• integrated_plotting_functions
• ipympl_fix
• iter_viz
• iterable_dtypes_fix
• jitter_signal
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• k_means
• k_means_mat
• kmeans_neighborhood_nb_update
• kmeans_nh_no_excluded_channels_fix
• kmeans_seed
• landing_doc
• lda_metrics
• line-length-fix
• line_length
• load_tree_wrong_chan_name
• load_utils/load_tif
• load_utils_fix
• load_utils_float_conversion_warning
• local-updating
• localize-mibitiff
• low_contrast_warning
• m1_ark_setup
• main
• mantis/generalize_seg_mask_suffix
• mantis/img_suffix
• mantis_assign_cells
• mantis_dir
• mantis_seg_suffix
• marker_verify
• mask_index_fix
• master
• meta_dup
• meta_zscore_slider
• metacluster_gui
• metacluster_width
• mibilib-workaround
• mibitiff-throw-error
• mibitiff_cell_mat
• mixing_score
• modify_nuc_labels
• morph_add
• morph_doc
• morph_index_fix
• move_meta_rename
• multiarch_docker
• nbsphinx_delete
• neigh_index
• neighbor_notebook
• neighborhood_progress
• new_cluster_boost
• new_rand_mod
• new_som
• next_release_v0.4.1
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• next_release_v0.4.4
• next_release_v0.5.0
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• ngreenwald-patch-1
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• no-contrast-check
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• notebook_reorg
• notebook_tests
• notebook_update_test_bash_cmd
• nuc_filter
• nuc_memb_viz
• nuclear_counts_false
• nuclear_fix
• nuclei_split_threshold
• ome_tiff
• optimization/compressed_csvs
• optimize_df_merging
• overlay_cmap
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• pixel_mask
• pixel_mask_batches
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• pixel_overlay_patch
• pixel_path_fix
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• pixie/filter_with_nuclear_mask
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Build # 8072417586

Build Type

push

github

Committed by web-flow

Commit Message

Changes process lists search for matching fov and mask names to use a… (#1104)

* Changes process lists search for matching fov and mask names to use a token subsetting strategy rather than a string subsetting one.

* Add test for processed_lists

* Renamed process_lists to get_existing_mask_types in marker_quantification and test.

* Fixed formatting.

* skip test_load_anndatas

---------

Co-authored-by: alex-l-kong <alkong@ucdavis.edu>
Co-authored-by: alex-l-kong <31424707+alex-l-kong@users.noreply.github.com>
Co-authored-by: csowers <camisowers@g.ucla.edu>

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