broadinstitute / hellbender / 2683

Builds Branch Commit Type Ran Committer Via Coverage
2683 master count reads in spark + integration test Pull #920 akiezun travis-ci pending completion   set done
2681 master Remove protective copying operations from the spark BQSR Turns out these may not be needed in spark (unlike in dataflow). Let's get expert confirmation that this is the case, however, before merging. Pull #925 droazen travis-ci pending completion   set done
2680 dr_remove_protective_copies_from_spark_bqsr Remove protective copying operations from the spark BQSR Turns out these may not be needed in spark (unlike in dataflow). Let's get expert confirmation that this is the case, however, before merging. push droazen travis-ci pending completion   set done
2679 master Remove protective copying operations from the spark BQSR Turns out these may not be needed in spark (unlike in dataflow). Let's get expert confirmation that this is the case, however, before merging. Pull #925 droazen travis-ci pending completion   set done
2678 dr_remove_protective_copies_from_spark_bqsr Remove protective copying operations from the spark BQSR Turns out these may not be needed in spark (unlike in dataflow). Let's get expert confirmation that this is the case, however, before merging. push droazen travis-ci pending completion   set done
2677 master Merge pull request #911 from broadinstitute/dr_lb_spark_bqsr BQSR on spark push droazen travis-ci pending completion   set done
2676 tw_test Try treeReduce for the final reduction to reduce the amount of data sent to the driver. push tomwhite travis-ci pending completion   set done
2675 master Use the sequence dictionary when reading from HDFS if one's available. Pull #924 tomwhite travis-ci pending completion   set done
2674 tw_hadoop_use_seq_dict Use the sequence dictionary when reading from HDFS if one's available. push tomwhite travis-ci pending completion   set done
2673 master Merge pull request #916 from broadinstitute/tw_parallelism_comment Add a comment explaining parallelism of 0. push tomwhite travis-ci pending completion   set done
2672 master Remove one shuffle by processing fragments and paired ends together. Pull #905 tomwhite travis-ci pending completion   set done
2671 tw_spark_markdupes_optimization Remove one shuffle by processing fragments and paired ends together. push tomwhite travis-ci pending completion   set done
2670 master Add a comment explaining parallelism of 0. Pull #916 tomwhite travis-ci pending completion   set done
2669 tw_parallelism_comment Add a comment explaining parallelism of 0. push tomwhite travis-ci pending completion   set done
2668 master BQSR on spark -Ported BQSR and ApplyBQSR to spark. -Refactored the BQSR engine so that all versions of BQSR (walker, dataflow, and spark) call into a common engine, and removed duplicated versions of the engine from the codebase. Pull #911 droazen travis-ci pending completion   set done