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umich-brcf-bioinf / Jacquard
77%
master: 98%

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Build:
LAST BUILD BRANCH: develop
DEFAULT BRANCH: master
Repo Added 08 Oct 2014 02:54PM UTC
Files 20
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LAST BUILD ON BRANCH refactor_normalize
branch: refactor_normalize
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  • refactor_normalize
  • EX-64_moveCallerBasedMethodsInMergeToNormalize
  • EX-91_distinguish_varscanHC_sources
  • EX-92_Fix_normalize
  • JQ-319_update_to_recognize_newer_Mutect_format
  • JQ-322_adjust_mutect_translate
  • JQ-324_pad_optional_trailing_format_fields
  • JQ-329_fix_mutect_AF_FA_tag
  • develop
  • distinguish_varscanHC_sources
  • doc_spike
  • ex-102_filterAndSortColumns
  • ex-109-dynamic_mocking_framework
  • ex-115_addTagsIn
  • ex-154_validate_samples
  • ex-156_safelyAddToExistingDirectory
  • ex-160_fixConsensus
  • ex-161_orderVcfHeadersCorrect
  • ex-164_high_confidence_file
  • ex-166_snpIndels
  • ex-167_check_vcf_
  • ex-168_extend_filter_command
  • ex-171_replace_merge_with_merge2
  • ex-173_move_versioning_into_init
  • ex-174_consolidate_rounding_in_utils
  • ex-176_translated_vcf_objec
  • ex-181_downgrade_to_4.1
  • ex-185_specifyLogFileLocatoin
  • ex-196_consensus_to_summarize
  • ex-198_add_docstrings
  • ex-199_exampleTestData
  • ex-202_simplify_summary_tags
  • ex-209_combine_filter_merge_commands
  • ex-210_allowPython2.7OrPython3
  • ex-217_rearrangeClassesAndPackages
  • ex-246_process_unsorted_vcfs
  • ex-258_disambiguate_format_tags
  • ex-260_Add-Genotype-Tag
  • ex-264_modify_jacquard_tags
  • ex-266_simplify_merge_implementation
  • ex-267_add-documentation
  • ex-83_Pip_install
  • hotfix_strelka_af
  • jq-320_fix_expand_handling_of_name_collisions_between_fixed_and_info
  • logging
  • master
  • merge2
  • refactor_merge
  • release
  • release-0.3
  • release-0.31
  • spike_expand_filtering
  • v0.31
  • v0.41
  • v0.42
  • v0.43
  • v1.0.0
  • v1.1.1
  • v1.1.4
  • v1.1.5

pending completion
241

push

travis-ci

jebene
EX-64 (jebene/kmeng) - altered output filename so that it preserves
input filename prefixes and suffixes

2107 of 2744 relevant lines covered (76.79%)

0.77 hits per line

Relevant lines Covered
Build:
Build:
2744 RELEVANT LINES 2107 COVERED LINES
0.77 HITS PER LINE
Source Files on refactor_normalize
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
241 refactor_normalize EX-64 (jebene/kmeng) - altered output filename so that it preserves input filename prefixes and suffixes push 20 Oct 2014 05:59PM UTC jebene travis-ci pending completion  
236 refactor_normalize EX-64(jebene/kmeng): Finished VarScan implementation, testing now. push 17 Oct 2014 07:49PM UTC higurekon travis-ci pending completion  
234 refactor_normalize EX-64(kmeng): More refactoring done in normalize.py. push 16 Oct 2014 03:17PM UTC higurekon travis-ci pending completion  
232 refactor_normalize EX-64(kmeng): Committing changes made to Varscan and Strelka tests for more precise JQException testing push 15 Oct 2014 04:31PM UTC higurekon travis-ci pending completion  
231 refactor_normalize EX-64(kmeng): Continued work on moving normalize.py functionality into VarScan, building tests now. push 14 Oct 2014 07:53PM UTC higurekon travis-ci pending completion  
230 refactor_normalize (kmeng): Merge remote-tracking branch 'origin/develop' into refactor_normalize Conflicts: jacquard/normalize.py test/normalize_test.py push 14 Oct 2014 07:17PM UTC higurekon travis-ci pending completion  
229 refactor_normalize EX-64(kmeng): Normalize functionality migrated to Strelka. Varscan in the middle of tests. push 14 Oct 2014 06:59PM UTC higurekon travis-ci pending completion  
224 refactor_normalize EX-64(cgates/kmeng): Modifying Strelka to have its own normalize.py functionality. push 13 Oct 2014 06:13PM UTC higurekon travis-ci pending completion  
223 refactor_normalize EX-64(cgates/kmeng): Added tests to normalize.py. push 13 Oct 2014 04:42PM UTC higurekon travis-ci pending completion  
215 refactor_normalize EX-64(kmeng): Quick update to normalize_test and normalize.py push 10 Oct 2014 07:58PM UTC higurekon travis-ci pending completion  
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