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umich-brcf-bioinf / Jacquard
87%
master: 98%

Build:
Build:
LAST BUILD BRANCH: develop
DEFAULT BRANCH: master
Repo Added 08 Oct 2014 02:54PM UTC
Files 20
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LAST BUILD ON BRANCH ex-176_translated_vcf_objec
branch: ex-176_translated_vcf_objec
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  • ex-176_translated_vcf_objec
  • EX-64_moveCallerBasedMethodsInMergeToNormalize
  • EX-91_distinguish_varscanHC_sources
  • EX-92_Fix_normalize
  • JQ-319_update_to_recognize_newer_Mutect_format
  • JQ-322_adjust_mutect_translate
  • JQ-324_pad_optional_trailing_format_fields
  • JQ-329_fix_mutect_AF_FA_tag
  • develop
  • distinguish_varscanHC_sources
  • doc_spike
  • ex-102_filterAndSortColumns
  • ex-109-dynamic_mocking_framework
  • ex-115_addTagsIn
  • ex-154_validate_samples
  • ex-156_safelyAddToExistingDirectory
  • ex-160_fixConsensus
  • ex-161_orderVcfHeadersCorrect
  • ex-164_high_confidence_file
  • ex-166_snpIndels
  • ex-167_check_vcf_
  • ex-168_extend_filter_command
  • ex-171_replace_merge_with_merge2
  • ex-173_move_versioning_into_init
  • ex-174_consolidate_rounding_in_utils
  • ex-181_downgrade_to_4.1
  • ex-185_specifyLogFileLocatoin
  • ex-196_consensus_to_summarize
  • ex-198_add_docstrings
  • ex-199_exampleTestData
  • ex-202_simplify_summary_tags
  • ex-209_combine_filter_merge_commands
  • ex-210_allowPython2.7OrPython3
  • ex-217_rearrangeClassesAndPackages
  • ex-246_process_unsorted_vcfs
  • ex-258_disambiguate_format_tags
  • ex-260_Add-Genotype-Tag
  • ex-264_modify_jacquard_tags
  • ex-266_simplify_merge_implementation
  • ex-267_add-documentation
  • ex-83_Pip_install
  • hotfix_strelka_af
  • jq-320_fix_expand_handling_of_name_collisions_between_fixed_and_info
  • logging
  • master
  • merge2
  • refactor_merge
  • refactor_normalize
  • release
  • release-0.3
  • release-0.31
  • spike_expand_filtering
  • v0.31
  • v0.41
  • v0.42
  • v0.43
  • v1.0.0
  • v1.1.1
  • v1.1.4
  • v1.1.5

pending completion
552

push

travis-ci

cgates
EX-189 (cgates): Actually enabled sorting in merge

2108 of 2410 relevant lines covered (87.47%)

0.87 hits per line

Relevant lines Covered
Build:
Build:
2410 RELEVANT LINES 2108 COVERED LINES
0.87 HITS PER LINE
Source Files on ex-176_translated_vcf_objec
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
552 ex-176_translated_vcf_objec EX-189 (cgates): Actually enabled sorting in merge push 03 Mar 2015 08:11PM UTC cgates travis-ci pending completion  
547 ex-176_translated_vcf_objec EX-189 (cgates): Actually enabled sorting in merge push 02 Mar 2015 08:47PM UTC cgates travis-ci pending completion  
546 ex-176_translated_vcf_objec EX-191 (cgates): Added mock_logger push 02 Mar 2015 05:22PM UTC cgates travis-ci pending completion  
544 ex-176_translated_vcf_objec EX-189(kmeng cgates): Initial commit. push 27 Feb 2015 07:08PM UTC higurekon travis-ci pending completion  
543 ex-176_translated_vcf_objec EX-191(kmeng cgates): Added validate_args to command_validator. push 27 Feb 2015 03:38PM UTC higurekon travis-ci pending completion  
542 ex-176_translated_vcf_objec EX-191 (cgates): Continue validation for claim method push 26 Feb 2015 10:10PM UTC cgates travis-ci pending completion  
541 ex-176_translated_vcf_objec EX-191(kmeng cgates): Unclaimed files now being saved in collection in variant_caller_factory. push 26 Feb 2015 06:49PM UTC higurekon travis-ci pending completion  
540 ex-176_translated_vcf_objec EX-187(kmeng cgates) Forgot to commit jacquard functional test file. push 26 Feb 2015 06:17PM UTC higurekon travis-ci pending completion  
538 ex-176_translated_vcf_objec EX-192(kmeng cgates): Translate now segregates snp and indel files into VCF/HC pairs. Tested push 26 Feb 2015 04:23PM UTC higurekon travis-ci pending completion  
537 ex-176_translated_vcf_objec EX-187 (cgates): Disable functional test until we can fix Varscan claim push 25 Feb 2015 10:33PM UTC cgates travis-ci pending completion  
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