umich-brcf-bioinf / Jacquard

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LAST BUILD ON BRANCH hotfix_strelka_af

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• hotfix_strelka_af
• EX-64_moveCallerBasedMethodsInMergeToNormalize
• EX-91_distinguish_varscanHC_sources
• EX-92_Fix_normalize
• JQ-319_update_to_recognize_newer_Mutect_format
• JQ-322_adjust_mutect_translate
• JQ-324_pad_optional_trailing_format_fields
• JQ-329_fix_mutect_AF_FA_tag
• develop
• distinguish_varscanHC_sources
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• ex-109-dynamic_mocking_framework
• ex-115_addTagsIn
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• ex-156_safelyAddToExistingDirectory
• ex-160_fixConsensus
• ex-161_orderVcfHeadersCorrect
• ex-164_high_confidence_file
• ex-166_snpIndels
• ex-167_check_vcf_
• ex-168_extend_filter_command
• ex-171_replace_merge_with_merge2
• ex-173_move_versioning_into_init
• ex-174_consolidate_rounding_in_utils
• ex-176_translated_vcf_objec
• ex-181_downgrade_to_4.1
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• ex-196_consensus_to_summarize
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• ex-199_exampleTestData
• ex-202_simplify_summary_tags
• ex-209_combine_filter_merge_commands
• ex-210_allowPython2.7OrPython3
• ex-217_rearrangeClassesAndPackages
• ex-246_process_unsorted_vcfs
• ex-258_disambiguate_format_tags
• ex-260_Add-Genotype-Tag
• ex-264_modify_jacquard_tags
• ex-266_simplify_merge_implementation
• ex-267_add-documentation
• ex-83_Pip_install
• jq-320_fix_expand_handling_of_name_collisions_between_fixed_and_info
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• release-0.31
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Build # 238

Build Type

push

travis-ci

Committed by jebene

Commit Message

HOTFIX (jebene) - changed strelka af calculation of indels to use TIR
instead of TAR

Run Details

2012 of 2541 relevant lines covered (79.18%)

0.79 hits per line