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umich-brcf-bioinf / Jacquard
86%
master: 98%

Build:
Build:
LAST BUILD BRANCH: develop
DEFAULT BRANCH: master
Repo Added 08 Oct 2014 02:54PM UTC
Files 20
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LAST BUILD ON BRANCH merge2
branch: merge2
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  • merge2
  • EX-64_moveCallerBasedMethodsInMergeToNormalize
  • EX-91_distinguish_varscanHC_sources
  • EX-92_Fix_normalize
  • JQ-319_update_to_recognize_newer_Mutect_format
  • JQ-322_adjust_mutect_translate
  • JQ-324_pad_optional_trailing_format_fields
  • JQ-329_fix_mutect_AF_FA_tag
  • develop
  • distinguish_varscanHC_sources
  • doc_spike
  • ex-102_filterAndSortColumns
  • ex-109-dynamic_mocking_framework
  • ex-115_addTagsIn
  • ex-154_validate_samples
  • ex-156_safelyAddToExistingDirectory
  • ex-160_fixConsensus
  • ex-161_orderVcfHeadersCorrect
  • ex-164_high_confidence_file
  • ex-166_snpIndels
  • ex-167_check_vcf_
  • ex-168_extend_filter_command
  • ex-171_replace_merge_with_merge2
  • ex-173_move_versioning_into_init
  • ex-174_consolidate_rounding_in_utils
  • ex-176_translated_vcf_objec
  • ex-181_downgrade_to_4.1
  • ex-185_specifyLogFileLocatoin
  • ex-196_consensus_to_summarize
  • ex-198_add_docstrings
  • ex-199_exampleTestData
  • ex-202_simplify_summary_tags
  • ex-209_combine_filter_merge_commands
  • ex-210_allowPython2.7OrPython3
  • ex-217_rearrangeClassesAndPackages
  • ex-246_process_unsorted_vcfs
  • ex-258_disambiguate_format_tags
  • ex-260_Add-Genotype-Tag
  • ex-264_modify_jacquard_tags
  • ex-266_simplify_merge_implementation
  • ex-267_add-documentation
  • ex-83_Pip_install
  • hotfix_strelka_af
  • jq-320_fix_expand_handling_of_name_collisions_between_fixed_and_info
  • logging
  • master
  • refactor_merge
  • refactor_normalize
  • release
  • release-0.3
  • release-0.31
  • spike_expand_filtering
  • v0.31
  • v0.41
  • v0.42
  • v0.43
  • v1.0.0
  • v1.1.1
  • v1.1.4
  • v1.1.5

pending completion
437

push

travis-ci

jebene
ex-151 (jebene) - removed fixed TODO

2695 of 3133 relevant lines covered (86.02%)

0.86 hits per line

Relevant lines Covered
Build:
Build:
3133 RELEVANT LINES 2695 COVERED LINES
0.86 HITS PER LINE
Source Files on merge2
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
437 merge2 ex-151 (jebene) - removed fixed TODO push 19 Jan 2015 03:52PM UTC jebene travis-ci pending completion  
438 merge2 Merge remote-tracking branch 'origin/develop' into merge2 push 19 Jan 2015 03:49PM UTC jebene travis-ci pending completion  
436 merge2 ex-151 (jebene) - focused contig metaheaders, added more tests, fixed functional test push 19 Jan 2015 03:48PM UTC jebene travis-ci pending completion  
435 merge2 EX-151(cgates): Adjusted functional test to pass push 19 Jan 2015 02:01PM UTC cgates travis-ci pending completion  
434 merge2 EX-151 (cgates): Refactoring merge2 push 19 Jan 2015 12:36PM UTC cgates travis-ci pending completion  
433 merge2 Merge remote-tracking branch 'origin/tag_anomalous_variants' into develop Conflicts: jacquard/expand.py jacquard/merge.py jacquard/utils.py jacquard/vcf.py test/merge_test.py test/pivot_variants_test.py push 16 Jan 2015 10:25PM UTC higurekon travis-ci pending completion  
431 merge2 ex-151 (jebene/kmeng) - started winnowing down the metaheaders. push 14 Jan 2015 10:17PM UTC higurekon travis-ci pending completion  
430 merge2 EX-152(kmeng jebene): Natural ordering for sample names programmed. push 14 Jan 2015 08:56PM UTC higurekon travis-ci pending completion  
429 merge2 EX-137: Adjusted to allow mult-alts; minor PEP8 cleanup. push 14 Jan 2015 07:43PM UTC cgates travis-ci pending completion  
425 merge2 EX-135 (cgates): Tiny improvement to vcf_test.VcfReaderTestCase. push 12 Jan 2015 12:31PM UTC cgates travis-ci pending completion  
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