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umich-brcf-bioinf / Jacquard
86%
master: 98%

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Build:
LAST BUILD BRANCH: develop
DEFAULT BRANCH: master
Repo Added 08 Oct 2014 02:54PM UTC
Files 20
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LAST BUILD ON BRANCH ex-156_safelyAddToExistingDirectory
branch: ex-156_safelyAddToExistingDirectory
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  • ex-156_safelyAddToExistingDirectory
  • EX-64_moveCallerBasedMethodsInMergeToNormalize
  • EX-91_distinguish_varscanHC_sources
  • EX-92_Fix_normalize
  • JQ-319_update_to_recognize_newer_Mutect_format
  • JQ-322_adjust_mutect_translate
  • JQ-324_pad_optional_trailing_format_fields
  • JQ-329_fix_mutect_AF_FA_tag
  • develop
  • distinguish_varscanHC_sources
  • doc_spike
  • ex-102_filterAndSortColumns
  • ex-109-dynamic_mocking_framework
  • ex-115_addTagsIn
  • ex-154_validate_samples
  • ex-160_fixConsensus
  • ex-161_orderVcfHeadersCorrect
  • ex-164_high_confidence_file
  • ex-166_snpIndels
  • ex-167_check_vcf_
  • ex-168_extend_filter_command
  • ex-171_replace_merge_with_merge2
  • ex-173_move_versioning_into_init
  • ex-174_consolidate_rounding_in_utils
  • ex-176_translated_vcf_objec
  • ex-181_downgrade_to_4.1
  • ex-185_specifyLogFileLocatoin
  • ex-196_consensus_to_summarize
  • ex-198_add_docstrings
  • ex-199_exampleTestData
  • ex-202_simplify_summary_tags
  • ex-209_combine_filter_merge_commands
  • ex-210_allowPython2.7OrPython3
  • ex-217_rearrangeClassesAndPackages
  • ex-246_process_unsorted_vcfs
  • ex-258_disambiguate_format_tags
  • ex-260_Add-Genotype-Tag
  • ex-264_modify_jacquard_tags
  • ex-266_simplify_merge_implementation
  • ex-267_add-documentation
  • ex-83_Pip_install
  • hotfix_strelka_af
  • jq-320_fix_expand_handling_of_name_collisions_between_fixed_and_info
  • logging
  • master
  • merge2
  • refactor_merge
  • refactor_normalize
  • release
  • release-0.3
  • release-0.31
  • spike_expand_filtering
  • v0.31
  • v0.41
  • v0.42
  • v0.43
  • v1.0.0
  • v1.1.1
  • v1.1.4
  • v1.1.5

pending completion
528

push

travis-ci

cgates
EX-177 (cgates): Adjusted expand, consensus to relax file name
restrictions and also fixed both tho avoid overwriting exitsing files.

2515 of 2921 relevant lines covered (86.1%)

0.86 hits per line

Relevant lines Covered
Build:
Build:
2921 RELEVANT LINES 2515 COVERED LINES
0.86 HITS PER LINE
Source Files on ex-156_safelyAddToExistingDirectory
  • List 0
  • Changed 4
  • Source Changed 4
  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
528 ex-156_safelyAddToExistingDirectory EX-177 (cgates): Adjusted expand, consensus to relax file name restrictions and also fixed both tho avoid overwriting exitsing files. push 19 Feb 2015 09:12PM UTC cgates travis-ci pending completion  
512 ex-156_safelyAddToExistingDirectory ex-175 (cgates): PEP8 cleanup push 13 Feb 2015 03:06PM UTC cgates travis-ci pending completion  
480 ex-156_safelyAddToExistingDirectory Merge remote-tracking branch 'origin/develop' into ex-156_safelyAddToExistingDirectory Conflicts: jacquard/consensus.py test/consensus_test.py test/functional_tests/05_consensus/benchmark/consensus.vcf push 04 Feb 2015 09:09PM UTC jebene travis-ci pending completion  
479 ex-156_safelyAddToExistingDirectory ex-169 (jebene/cgates) - made tests pass push 04 Feb 2015 08:52PM UTC jebene travis-ci pending completion  
478 ex-156_safelyAddToExistingDirectory EX-156(kmeng cgates): Fixed bugs in command validator. push 30 Jan 2015 08:56PM UTC higurekon travis-ci pending completion  
477 ex-156_safelyAddToExistingDirectory EX-156(kmeng): Fixed the tests to allow hooking in command validator to jacquard.py push 30 Jan 2015 05:11PM UTC higurekon travis-ci pending completion  
473 ex-156_safelyAddToExistingDirectory ex-156 (jebene/kmeng/cgates) - added preflight, began hooking up new modules to jacquard push 28 Jan 2015 10:16PM UTC higurekon travis-ci pending completion  
472 ex-156_safelyAddToExistingDirectory ex-156 (jebene) - commented out failing tests on Travis -- need to fix this test push 26 Jan 2015 09:58PM UTC jebene travis-ci pending completion  
468 ex-156_safelyAddToExistingDirectory EX-156(kmeng): Tests added for jacquard preflight method. push 25 Jan 2015 10:31PM UTC kmeng travis-ci pending completion  
467 ex-156_safelyAddToExistingDirectory EX-156(kmeng): Began hooking preflight into jacquard.py. push 25 Jan 2015 05:08AM UTC kmeng travis-ci pending completion  
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