broadinstitute / viral-assemble
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LAST BUILD ON BRANCH v2.4.3.1
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coverage: 69.173%. Remained the same
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Merge pull request #59 from broadinstitute/fix-issue-58-missing-sqp-seq

Fix sequip version mismatch causing missing Perl modules

238 of 378 branches covered (62.96%)

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1427 of 2029 relevant lines covered (70.33%)

0.7 hits per line

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2029 RELEVANT LINES 1427 COVERED LINES
0.7 HITS PER LINE
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Builds Branch Commit Type Ran Committer Via Coverage
18246981749 v2.4.3.1 Merge pull request #59 from broadinstitute/fix-issue-58-missing-sqp-seq Fix sequip version mismatch causing missing Perl modules push web-flow github
69.17
18246921327 master Merge pull request #59 from broadinstitute/fix-issue-58-missing-sqp-seq Fix sequip version mismatch causing missing Perl modules push web-flow github
69.17
18246807362 fix-issue-58-missing-sqp-seq Merge 9a0369bab into 3c75af42a Pull #59 web-flow github
69.17
18246713416 fix-issue-58-missing-sqp-seq Fix sequip version mismatch causing missing Perl modules The Dockerfile was hardcoded to sequip version 0.10 but the conda package was updated to version 0.11, causing the PERL5LIB path to point to a non-existent directory. This resulted in sqp_s... push dpark01 github
69.17
18244692473 v2.4.3.0 Merge pull request #57 from broadinstitute/dp-wgsim Add simulate_illumina_reads command for synthetic read generation push web-flow github
69.17
18244599936 master Merge pull request #57 from broadinstitute/dp-wgsim Add simulate_illumina_reads command for synthetic read generation push web-flow github
69.17
18238282946 dp-wgsim Fix test_simulate_bed_coverage to use larger regions Increase BED regions from 1000bp/500bp to 2000bp/3000bp to ensure regions are large enough for wgsim with default outer_distance=500 (wgsim requires region_len >= outer_distance + read_length =... Pull #57 dpark01 github
69.17
18237618744 master Merge pull request #56 from broadinstitute/dp-bump-core viral-core 2.4.2 to 2.4.3 push web-flow github
68.02
18236138842 dp-bump-core bump viral core Pull #56 dpark01 github
68.02
18226076066 dp-wgsim Merge pull request #54 from broadinstitute/dp-downsample dependency updates and un-hardcode a skani parameter push web-flow github
68.02
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