broadinstitute / viral-assemble / 20935092662

Builds Branch Commit Type Ran Committer Via Coverage
20935092662 v2.5.21.0 Merge pull request #66 from broadinstitute/bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils push web-flow github
67.84
20935092612 v2.5.21.0 Merge pull request #66 from broadinstitute/bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils push web-flow github
67.84
20934942019 master Merge pull request #66 from broadinstitute/bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils push web-flow github
67.84
20934714186 gh-readonly-queue/master/pr-66-83bcaa24e92f7c4c880f25f9f7ae1ce11d58b3d3 Merge pull request #66 from broadinstitute/bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils push web-flow github
67.84
20934714192 gh-readonly-queue/master/pr-66-83bcaa24e92f7c4c880f25f9f7ae1ce11d58b3d3 Merge pull request #66 from broadinstitute/bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils push web-flow github
67.84
20934499141 bump-core Handle merge queue branches in docker tag generation Add case for gh-readonly-queue/* branches to avoid slashes in Docker tags. Extracts PR number and creates tags like merge-queue-pr-123. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> Pull #66 dpark01 github
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20933853768 bump-core Add explicit permissions to workflow for CodeQL compliance Set contents: read as the default permission for all jobs, following the principle of least privilege. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> Pull #66 dpark01 github
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20933791772 bump-core Merge bc7b4fbc7 into 83bcaa24e Pull #66 web-flow github
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20933769415 bump-core Move trim_rmdup_subsamp_reads to viral-core read_utils This function now lives in viral-core (PR #161). Remove the local implementation and tests, update assemble_spades to call read_utils.trim_rmdup_subsamp_reads instead. Co-Authored-By: Claude... push dpark01 github
67.84
20787911106 master Merge pull request #65 from broadinstitute/dp-fix-skani-empty-header Write header-only output when skani produces no matches push web-flow github
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20761831555 dp-fix-skani-empty-header Write header-only output when skani produces no matches When skani dist finds no matches and produces an empty file (0 bytes), the downstream code fails because readFlatFileHeader returns [''] for an empty file, causing issues with csv.DictWriter... Pull #65 dpark01 github
69.26
20761837442 dp-fix-skani-empty-header Merge c2aba11e7 into 3c5fd1b2b Pull #65 web-flow github
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20757420169 v2.5.18.0 Merge pull request #64 from broadinstitute/bump-core bump viral-core push web-flow github
69.24
20756095898 master Merge pull request #64 from broadinstitute/bump-core bump viral-core push web-flow github
69.24
20755638238 bump-core bump viral-core Pull #64 dpark01 github
69.24