broadinstitute / viral-assemble / 20933769415
68%
master: 68%

LAST BUILD BRANCH: v2.5.21.0
DEFAULT BRANCH: master
Ran
Jobs 1
Files 9
Run time 1min
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coverage: 67.839% (-1.4%) from 69.237%
20933769415

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dpark01 
Move trim_rmdup_subsamp_reads to viral-core read_utils

This function now lives in viral-core (PR #161). Remove the local
implementation and tests, update assemble_spades to call
read_utils.trim_rmdup_subsamp_reads instead.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

226 of 366 branches covered (61.75%)

Branch coverage included in aggregate %.

1337 of 1938 relevant lines covered (68.99%)

0.69 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
4
95.69
 0.08% opt/viral-ngs/viral-assemble/assemble/skani.py
178
79.12
 -1.94% opt/viral-ngs/viral-assemble/assembly.py
Jobs
ID Job ID Ran Files Coverage
1 20933769415.1 9
67.84
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Source Files on build 20933769415