GavinHuttley / cogent3
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coverage: 91.939%. First build
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GavinHuttley 
DOC: described revised coevolution code in changelog, readme and docs

33108 of 36011 relevant lines covered (91.94%)

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Builds Branch Commit Type Ran Committer Via Coverage
11312163017 develop DOC: described revised coevolution code in changelog, readme and docs push GavinHuttley github
91.94
11171541409 develop MAINT: new_moltype IUPAC symbol type consistency [CHANGED] We had a tuple, list and frozen set between DNA, RNA and PROTEIN IUPAC characters! Now all are tuples, so their order is unchanged between runs and immutable. push GavinHuttley github
92.1
11171393938 develop TST: actually save the tests! [NEW] refactored tests to pytest and added new ones checking annotation_offset usage [CHANGED] address code review issue push GavinHuttley github
92.1
11171203118 develop API: add annotation_offset parameter to the make_seq and load_seq functions [CHANGED] explicitly test this and resolve comment on another test push GavinHuttley github
92.11
11156677042 develop API: change setting of annotation_offset and SeqView.offset [CHANGED] the annotation_offset attribute on sequences is now set directly on the SeqView object (both old and new sequence modules). You can no longer assign the annotation_offset a... push GavinHuttley github
92.1
11115938955 develop ENH: simplify construction of DictArray and DistanceMatrix [NEW] DictArray.from_array_names: construct a DictArray directly from a numpy array and names. The number of series of names must match the dimensions of the array. [NEW] Distanc... push GavinHuttley github
92.11
10932519143 develop MAINT: address codacy issues push GavinHuttley github
92.11
10932480306 develop DEV: added changelog snippet push GavinHuttley github
92.11
10932454327 develop BUG: using new IndelMap methods eliminates shared gaps for dotplots, fixes #2006 push GavinHuttley github
92.11
10931942122 develop MAINT: improve dosctrings push GavinHuttley github
92.11
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