EdinburghGenomics
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Analysis-Driver
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update_req_yield
branch: update_req_yield
CHANGE BRANCH
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update_req_yield
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#374_include_coverage
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231_bcl2fastq2.20
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345_gatk4_trio_check
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356_picard2.18
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363_file_check
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367_species_in_reporting
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377_gatk4_pipeline
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382_check_bcl_exists_for_cycle
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385_deteminisic_samplesheet
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390_pipeline_objects
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394_limit_LIMS_rest_api
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396_filter_qc
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405_fix_IDT_barcode
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408_add_gatk3.8
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411_417_split_demultiplexing_per_lane
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415_fix_fastqc
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Change_Sample_Ready_Requirements
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ContaminationCheck_KE
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Fix_gatk_genotype
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Link_Creation_Fix
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Release_0.26
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Release_v0.25.1
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Release_v0.25.2
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VB8_fix_execute
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VB8_validation_corrections
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align_run_elements
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asana_update
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bcbio_no_cleanup_integrationtest
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early_align_run_aborted
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early_alignment
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enforce_fastq_merge
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exception_in_main_proc
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faster_varcall_QC
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fastq_filterer_fixes
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fix_bcl2fastq
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fix_build
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fix_duplicated_unmapped
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fix_insert_sizes_type
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fix_integration_tests
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fix_lims_ntf
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fix_missing_gvcf
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fix_project_bug
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fix_run_element_mapping
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fix_run_qc
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gatk4
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genotype_gvcfs_memory
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integrate_lims
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integrate_lims2
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integration_test
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interop_metrics
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issue/231/bcl2fastq2.20
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load_output_conf
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master
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mwham_develop
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mwham_refactor
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nonhuman_variantcalling
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overwrite_tabix_bgzip
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pdp_pool_fix
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project_on_valid_project
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project_process_MD5
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project_process_bugfix
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rapid_analysis
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record_data_source
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refactor
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relatedness_refactor
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remove_phix
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resume
-
review_trigger
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sample_aggregate_defaults
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sample_datasets_fix
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sex
-
test_gatk3.8
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tool_versions
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trios_relatedness
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update_core
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user_prep_libraries
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v0.17
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v0.18
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v0.18.1
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v0.19
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v0.19.1
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v0.19.2
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v0.20
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v0.20.1
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v0.21
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v0.22
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v0.22.1
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v0.23
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v0.23.1
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v0.24
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v0.24.1
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v0.25
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v0.25.1
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v0.25.2
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v0.25.3
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v0.26
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v0.26.1
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vb9_fixes
CHANGE BRANCH
x
-
update_req_yield
- #374_include_coverage
- 231_bcl2fastq2.20
- 345_gatk4_trio_check
- 356_picard2.18
- 363_file_check
- 367_species_in_reporting
- 377_gatk4_pipeline
- 382_check_bcl_exists_for_cycle
- 385_deteminisic_samplesheet
- 390_pipeline_objects
- 394_limit_LIMS_rest_api
- 396_filter_qc
- 405_fix_IDT_barcode
- 408_add_gatk3.8
- 411_417_split_demultiplexing_per_lane
- 415_fix_fastqc
- Change_Sample_Ready_Requirements
- ContaminationCheck_KE
- Fix_gatk_genotype
- Link_Creation_Fix
- Release_0.26
- Release_v0.25.1
- Release_v0.25.2
- VB8_fix_execute
- VB8_validation_corrections
- align_run_elements
- asana_update
- bcbio_no_cleanup_integrationtest
- early_align_run_aborted
- early_alignment
- enforce_fastq_merge
- exception_in_main_proc
- faster_varcall_QC
- fastq_filterer_fixes
- fix_bcl2fastq
- fix_build
- fix_duplicated_unmapped
- fix_insert_sizes_type
- fix_integration_tests
- fix_lims_ntf
- fix_missing_gvcf
- fix_project_bug
- fix_run_element_mapping
- fix_run_qc
- gatk4
- genotype_gvcfs_memory
- integrate_lims
- integrate_lims2
- integration_test
- interop_metrics
- issue/231/bcl2fastq2.20
- load_output_conf
- master
- mwham_develop
- mwham_refactor
- nonhuman_variantcalling
- overwrite_tabix_bgzip
- pdp_pool_fix
- project_on_valid_project
- project_process_MD5
- project_process_bugfix
- rapid_analysis
- record_data_source
- refactor
- relatedness_refactor
- remove_phix
- resume
- review_trigger
- sample_aggregate_defaults
- sample_datasets_fix
- sex
- test_gatk3.8
- tool_versions
- trios_relatedness
- update_core
- user_prep_libraries
- v0.17
- v0.18
- v0.18.1
- v0.19
- v0.19.1
- v0.19.2
- v0.20
- v0.20.1
- v0.21
- v0.22
- v0.22.1
- v0.23
- v0.23.1
- v0.24
- v0.24.1
- v0.25
- v0.25.1
- v0.25.2
- v0.25.3
- v0.26
- v0.26.1
- vb9_fixes
push
travis-ci
2297 of 3236 relevant lines covered (70.98%)
1.42 hits per line
Relevant lines Covered
3236
RELEVANT LINES
2297
COVERED LINES
1.42
HITS PER LINE
Source Files on update_req_yield
Recent builds
| Builds | Branch | Commit | Type | Ran | Committer | Via | Coverage |
|---|---|---|---|---|---|---|---|
| 1941 | update_req_yield | swap req yield and req yield q30 | push |  tcezard |
travis-ci | pending completion | |
| 1939 | update_req_yield | Fix the uploaded values and add mocked data to be tested in the integration testing | push | tcezard |
travis-ci | pending completion | |
| 1938 | update_req_yield | get the first read to use as template names | push | tcezard |
travis-ci | pending completion | |
| 1934 | update_req_yield | Replace ELEMENT_SAMPLE_EXPECTED_YIELD with new constant from EGCG-Core update EGCG-Core requirements test will fail until EGCG-core v0.7.5 is released | push | tcezard |
travis-ci | pending completion |