EdinburghGenomics / Analysis-Driver

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LAST BUILD ON BRANCH fix_run_element_mapping

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• fix_run_element_mapping
• #374_include_coverage
• 231_bcl2fastq2.20
• 345_gatk4_trio_check
• 356_picard2.18
• 363_file_check
• 367_species_in_reporting
• 377_gatk4_pipeline
• 382_check_bcl_exists_for_cycle
• 385_deteminisic_samplesheet
• 390_pipeline_objects
• 394_limit_LIMS_rest_api
• 396_filter_qc
• 405_fix_IDT_barcode
• 408_add_gatk3.8
• 411_417_split_demultiplexing_per_lane
• 415_fix_fastqc
• Change_Sample_Ready_Requirements
• ContaminationCheck_KE
• Fix_gatk_genotype
• Link_Creation_Fix
• Release_0.26
• Release_v0.25.1
• Release_v0.25.2
• VB8_fix_execute
• VB8_validation_corrections
• align_run_elements
• asana_update
• bcbio_no_cleanup_integrationtest
• early_align_run_aborted
• early_alignment
• enforce_fastq_merge
• exception_in_main_proc
• faster_varcall_QC
• fastq_filterer_fixes
• fix_bcl2fastq
• fix_build
• fix_duplicated_unmapped
• fix_insert_sizes_type
• fix_integration_tests
• fix_lims_ntf
• fix_missing_gvcf
• fix_project_bug
• fix_run_qc
• gatk4
• genotype_gvcfs_memory
• integrate_lims
• integrate_lims2
• integration_test
• interop_metrics
• issue/231/bcl2fastq2.20
• load_output_conf
• master
• mwham_develop
• mwham_refactor
• nonhuman_variantcalling
• overwrite_tabix_bgzip
• pdp_pool_fix
• project_on_valid_project
• project_process_MD5
• project_process_bugfix
• rapid_analysis
• record_data_source
• refactor
• relatedness_refactor
• remove_phix
• resume
• review_trigger
• sample_aggregate_defaults
• sample_datasets_fix
• sex
• test_gatk3.8
• tool_versions
• trios_relatedness
• update_core
• update_req_yield
• user_prep_libraries
• v0.17
• v0.18
• v0.18.1
• v0.19
• v0.19.1
• v0.19.2
• v0.20
• v0.20.1
• v0.21
• v0.22
• v0.22.1
• v0.23
• v0.23.1
• v0.24
• v0.24.1
• v0.25
• v0.25.1
• v0.25.2
• v0.25.3
• v0.26
• v0.26.1
• vb9_fixes

Build # 1929

Build Type

push

travis-ci

Committed by tcezard

Commit Message

get temp dir from parameter or the input file
Specify the memory allocated by parameter
add tests

Run Details

2297 of 3233 relevant lines covered (71.05%)

1.42 hits per line